Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004655.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq3283 111 3e-21 seq3439 100 5e-18 seq5745 93.3 7e-16 seq22495 91.5 3e-15 seq54129 89.7 9e-15 seq77518 82.4 1e-12 seq953 82.4 1e-12 seq35612 78.8 2e-11 seq3059 78.8 2e-11 seq442 78.8 2e-11 seq4104 77.0 6e-11 seq1993 77.0 6e-11 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 186/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1698 TCCAGAAACTCTTTATATGAT-GATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1756 |||| ||| |||||| ||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1757 GCCACCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCTCTTTGGGC 1816 || ||||||||||||| ||| ||||||||||||| |||| ||||| | || || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1817 CCCCATGAATTCTTTGAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGAC 1870 || | ||| | || | |||| ||| ||| | ||| |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1871 GTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGACTGAGATCCAGGTGTCCACATAAGTA 1930 ||| ||||| || || || ||| || | | | | ||||| ||| || ||| Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072 Query 1931 GTTGTGTGGACCCAGAGAGCGGGCCCA 1957 ||||||||| || | || || ||||| Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 175/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 1709 TTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAAT 1768 |||||| ||| || ||||| ||||||| || | |||| | ||||| || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1769 TTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTC 1828 ||||| ||| || |||||||||| ||| ||||| | || || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1829 TTTGAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGC 1882 || | |||| ||| ||| | ||| ||| ||||| |||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1883 GTCGTTGCTGTAGACCTTTGGACTGAGATCCAGGTGTCCACATAAGTAGTTGTGTGGACC 1942 || || ||| || | | | | ||||| ||| || |||||||||||| || Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1943 CAGAGAGCGGGCCCA 1957 | || || ||||| Sbjct 739 TAATGAACGAGCCCA 725 >seq5745 Length=45059 Score = 93.3 bits (102), Expect = 7e-16 Identities = 190/282 (67%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 1704 AACTCTTTATATGATGATGTTGGTCCT---GGATTGCAGAGGAAGATAGTGGGAATGCCA 1760 ||| ||||||| ||| | ||| || |||||||| | | |||| ||||| ||| Sbjct 43514 AACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCA 43573 Query 1761 CCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCC 1820 ||||||||||||| ||| || |||||||||| ||| ||||| | | ||| || || Sbjct 43574 CCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCT 43633 Query 1821 ATGAATTCTTTGAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGACGTTG 1874 ||||| | || | || | ||| ||| ||| || ||||||||||||||| Sbjct 43634 ATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTA 43693 Query 1875 TACCAGGCGTCGTTGCTGTAGACCTTTGGACTGAGATCCAGGTGTCCACATAAGTAGTTG 1934 ||||| |||||||| || || | | | | ||||| || || || || Sbjct 43694 TACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTA 43753 Query 1935 TGTGGACCCAGAGAGCGGGCCCACATTGTCTTTCCGGTCCTA 1976 |||||||||| || || ||||| | ||| || ||| | ||| Sbjct 43754 TGTGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTCTA 43795 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 164/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 1709 TTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAAT 1768 |||||| ||| | ||||| |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1769 TTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTC 1828 ||||| ||| || |||||||||| |||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1829 TTTGAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGC 1882 || | |||| ||| ||| | ||| || |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1883 GTCGTTGCTGTAGACCTTTGGACTGAGATCCAGGTGTCCACATAAGTAGTTGTGTGGACC 1942 || || ||| || | | | | ||||| ||| || |||||||||||| || Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 >seq54129 Length=2260 Score = 89.7 bits (98), Expect = 9e-15 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1725 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTCCCG 1784 ||||| |||||||| || | |||| | ||||| || ||||||||||||||||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1785 TACTTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTGAAGTGCT----- 1839 ||||||| |||| || |||| || || || | ||| | || | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1840 -TTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCA 1879 ||| ||| | ||| ||| || || |||||||| ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1728 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTAC 1787 || |||||||| || | |||| ||||| || ||||||||||||| || || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1788 TTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTGAAGTGCT------TT 1841 |||| ||| || |||| | ||| || || | ||| | || | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1842 AGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCGTT 1888 | ||| ||| ||| |||||||||||||| ||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 171/255 (67%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 1709 TTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAAT 1768 |||||| ||| | ||||| |||||||| | | |||| | ||||| || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1769 TTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTC 1828 |||||||| || |||||||||| |||| ||||| | || || | || | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1829 TTTGAAGTGCT------TTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGC 1882 || | | || ||| ||| | ||| |||||| || || ||||| ||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1883 GTCGTTGCTGTAGACCTTTGGACTGAGATCCAGGTGTCCACATAAGTAGTTGTGTGGACC 1942 || || ||| || | | | | ||||| || || |||||||||||| || Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCC 2063 Query 1943 CAGAGAGCGGGCCCA 1957 | || || ||||| Sbjct 2064 TAATGAACGAGCCCA 2078 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1709 TTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAAT 1768 |||||| ||| | ||||| |||||||| || | |||| | |||||||| |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1769 TTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCA 1804 ||||| ||| || |||||||||| ||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 107/150 (71%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 1725 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTCCCG 1784 ||||| |||||||| || | |||| | ||||| || ||||||||||||||||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1785 TACTTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTGAAGTGCT----- 1839 || |||| |||| | ||||| | || || || | ||| | || | |||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 20300 Query 1840 -TTAGATAGTGGGGATCGACGTCATCAATG 1868 ||| ||| | ||| |||||| |||||| Sbjct 20299 ATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq442 Length=237535 Score = 78.8 bits (86), Expect = 2e-11 Identities = 97/133 (73%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1709 TTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAAT 1768 |||||| ||| | | ||||| |||||||| || |||| | ||||| | |||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1769 TTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTC 1828 ||||| || || |||||||||| |||| ||| ||| || ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1829 TTTGAAGTGCTTT 1841 || | |||||| Sbjct 22882 TTAATAATGCTTT 22894 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1698 TCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATG 1757 |||| ||| |||||| ||| | ||||| |||||||| || | |||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1758 CCACCTTTAATTTGAATTGGCTTCCCGTACTTTGTAT 1794 || ||||||||||||| ||| || |||||||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq1993 Length=81530 Score = 77.0 bits (84), Expect = 6e-11 Identities = 117/167 (70%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1728 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTAC 1787 || |||||||| || | |||| ||||| || |||||||||||| ||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1788 TTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTGAAGTGCT------TT 1841 |||| ||| ||||| | | ||| || | | ||| | || | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1842 AGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCGTT 1888 | ||| ||| |||||||||||||||||| ||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8791384181250