Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004659.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value seq33 109 9e-21 seq5745 102 1e-18 seq3283 96.9 6e-17 seq1993 93.3 7e-16 seq4295 91.5 2e-15 seq1010 82.4 1e-12 seq22495 80.6 4e-12 seq5493 78.8 2e-11 >seq33 Length=454124 Score = 109 bits (120), Expect = 9e-21 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1684 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTA- 1742 |||||||||||||||||||| |||| ||||| | ||| || ||||| || || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1743 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTT 1802 |||||| ||||||||||||| ||| | || | | | || | || ||| | Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1803 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCGTTCGAGTAGACTCG 1862 || ||| || | ||||||||||||||||||||| | | ||||||||||| || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1863 TGGGTTGAAGTCCA-GATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGAGCCCA 1919 | || || |||| | | ||| || | || |||||||| || || | ||| ||||| Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATG-TAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq5745 Length=45059 Score = 102 bits (112), Expect = 1e-18 Identities = 182/261 (70%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 1684 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTA- 1742 ||||||||||||| |||||| |||| ||||| ||||| || ||||| || |||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1743 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTT 1802 ||||| |||||||||||| | || || || | | | || | |||||| | Sbjct 43601 TTTGC-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1803 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCA--CTTCGTTCGAGTAGACT 1860 || ||| || | || |||||||||||||||||| ||| | |||||||| || | Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATA--CCATGCGTCGTTCGATTATGTT 43717 Query 1861 CGTGGGTTGAAGTCCAGATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGAGCCCAC 1920 | || || |||| | || | | ||| |||||||| || || | ||| ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1921 ATCGTCTTCCCTGTTCTCGAA 1941 | || || || |||| ||| Sbjct 43778 ACTGTTTTACCGATTCTAGAA 43798 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 180/260 (69%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 1684 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTA- 1742 |||||||||||||| ||||| ||| ||||| ||||| || ||||| || || ||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1743 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTT 1802 ||||| ||| | |||||| | ||| || || | | | || | || || | Sbjct 2220 TTTGC-ATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1803 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCA--CTTCGTTCGAGTAGACT 1860 || ||| | ||| | |||||| || ||||||||||| ||| | || || ||||| | Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATA--CCATGCATCATTTGAGTACGTT 2104 Query 1861 CGTGGGTTGAAGTCCAGATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGAGCCCAC 1920 | || || |||| | ||| | | ||||| ||||||||||| | ||||||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1921 ATCGTCTTCCCTGTTCTCGA 1940 || |||||| |||| || Sbjct 2043 GCTGTTTTCCCTATTCTTGA 2024 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 1681 TCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCG 1740 || |||||||||||||||||||| |||| ||||| |||| || ||||| || |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1741 TA-TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAG 1799 || |||||| ||||||||||| | || || | | | | || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1800 CTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCGTTCGAGTAGAC 1859 ||| ||| || | ||||||||||||||||||||| | | | |||||| || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1860 TCGTGGGTTGAAGTCCAGATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGAGCCCA 1919 | | || || |||| | || | | ||| |||||||| || || | ||| | ||| Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 Query 1920 CATCGTCTTCCCTGTTCTCGAATCACCTTC 1949 | || || || |||| ||| ||||| Sbjct 74167 AACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq4295 Length=67413 Score = 91.5 bits (100), Expect = 2e-15 Identities = 170/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 1687 GGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTATTTG 1746 |||||| | ||||||||| ||||||| || ||||| || ||| | || || ||||| ||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1747 CAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTTTAGA 1806 |||||| | ||| | | ||||||| | | || ||||| || | |||| || | | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1807 TAGTGCGGTGCGACGTCATCAATGACGTTATATTCCA--CTTCGTTCGAGTAGACTCGTG 1864 ||| | | |||||||| || ||||| || ||| | | ||||| | | | Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTA--CCATGCATTATTCGAAAATGATTTCG 46666 Query 1865 GGTTGAAGTCCA-GATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGAGCCCACATC 1923 || || |||| || | ||| || | ||||||||||||| ||| | || ||||| || Sbjct 46665 AATTAAAATCCATGAAGCCCATTATG-TAGTTATGTGGGCATAAAGACCGTGCCCATATT 46607 Query 1924 GTCTT 1928 ||||| Sbjct 46606 GTCTT 46602 >seq1010 Length=204159 Score = 82.4 bits (90), Expect = 1e-12 Identities = 194/287 (68%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 1688 GATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTATTTGC 1747 ||||||| |||||||| || |||| | ||||| || ||| || || ||||| || Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1748 AATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTTT-AGA 1806 |||||| ||||| | | |||| ||| | || |||||||| || ||| || | | Sbjct 40854 CATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTTTTTTGCAAA 40795 Query 1807 TAGTGCGGTGCGACGTCATCAATGACGTTATATTCCA--CTTCGTTCGAGTAGACTCGTG 1864 ||| | | |||||||| || || ||||| ||| | | ||||| | | || Sbjct 40794 TAGGATAGAGACACGTCATCTATAACATTATA--CCATGCATTATTCGAAAATGATTTTG 40737 Query 1865 GGTTGAAGTCCA-GATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGAGCCCACATC 1923 || || || | || | ||| || | ||||||||||||||||| | || |||| || Sbjct 40736 AATTAAAATCTATGAAGCCCATTATG-TAGTTATGTGGGCCTAAAGATCGTTCCCATATT 40678 Query 1924 GTCTTCCCTGTTCTCGAATCACCTTCCACTATGAGACTCATTGGTCT 1970 ||||| || |||| | |||||| | |||| ||||| | || || Sbjct 40677 GTCTTTCCAATTCTAGTTGGACCTTCTAATATGTGACTCTTAGGCCT 40631 >seq22495 Length=567 Score = 80.6 bits (88), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 1684 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTA- 1742 |||||||||||||| ||||| | | ||||| | ||| || ||||| || || ||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1743 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTT 1802 ||||| ||| | |||||||| ||| || || | | | || || || || | Sbjct 307 TTTGC-ATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1803 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCA--CTTCGTTCGAGTAGACT 1860 || ||| | ||| | || |||||| ||||||||||| ||| | || || ||||| | Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATA--CCATGCATCATTTGAGTACGTT 191 Query 1861 CGTGGGTTGAAGTCCAGATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGA 1914 | || || |||| | ||| | | ||||| ||||||||||| | |||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq5493 Length=32325 Score = 78.8 bits (86), Expect = 2e-11 Identities = 109/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 1687 GGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTATTTG 1746 |||||||| | ||| || ||| ||| || | ||| || ||||| || || ||||| || Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1747 CAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTTTAGA 1806 |||||| ||||||| | || | || || || ||||||||| | || || ||| Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTTGC---AGA 31443 Query 1807 TAGTGCGGTGCGACGTCATCAATGACGTTATA 1838 || ||||| ||||||||||||| ||| || Sbjct 31442 TATGTCGGTGATACGTCATCAATGATGTTGTA 31411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8212981222810