Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004661.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq33 132 8e-28 seq1993 127 3e-26 seq5745 125 1e-25 seq77518 109 9e-21 seq3283 104 4e-19 seq6801 93.3 7e-16 seq4295 93.3 7e-16 seq1010 91.5 2e-15 seq22495 87.8 3e-14 seq5493 87.8 3e-14 seq54129 86.0 1e-13 seq30129 77.0 5e-11 seq4104 77.0 5e-11 seq490 77.0 5e-11 >seq33 Length=454124 Score = 132 bits (146), Expect = 8e-28 Identities = 173/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 |||||||||||||||||||| |||| ||||| | ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1753 TTACAATTTGACTGCCAGTCCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTTT 1812 || |||||||||||||| ||| | | | | | || | || ||| || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1813 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCTT 1872 | ||| || | |||||||||||||||||||||| | | |||||||| || ||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1873 GGGTTGAAGTCCA-GATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCA 1928 | || || |||| | | ||| || | ||||||||||| || |||| ||| ||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATG-TAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq1993 Length=81530 Score = 127 bits (140), Expect = 3e-26 Identities = 192/271 (71%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 1690 TCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCG 1749 || |||||||||||||||||||| |||| ||||| |||||||||||||||| |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1750 TACTTACAATTTGACTGCCAGT--CCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTA 1807 ||||| |||||||||||| | | || || | || | | | || | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTG--CTCATACGAACTGTTGATAATGATTTT 74289 Query 1808 GCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGA 1867 ||| ||| || | |||||||||||||||||||||| | | | |||||| || Sbjct 74288 TAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATG 74229 Query 1868 CTCTTGGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCC 1927 | | | || || |||| | || | | |||||||||||| || |||| ||| | || Sbjct 74228 TTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCC 74169 Query 1928 ACATCGTCTTCCCTGTTCTCGAATCACCTTC 1958 | | || || || |||| ||| ||||| Sbjct 74168 AAACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq5745 Length=45059 Score = 125 bits (138), Expect = 1e-25 Identities = 185/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 ||||||||||||| |||||| |||| ||||| ||||||||||||||||| ||||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1753 TTACAATTTGACTGCCAGT--CCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCT 1810 || |||||||||||| | | || || || | | | | || | || ||| Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGA--ACTGTTGATAATGTTTTTTAA 43658 Query 1811 TTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTC 1870 ||| ||| || | || ||||||||||||||||||| | |||||||| || | Sbjct 43659 TTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 1871 TTGGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACA 1930 | | || || |||| | || | | |||||||||||| || |||| ||| ||||| | Sbjct 43719 TCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAA 43778 Query 1931 TCGTCTTCCCTGTTCTCGAA 1950 || || || |||| ||| Sbjct 43779 CTGTTTTACCGATTCTAGAA 43798 >seq77518 Length=14724 Score = 109 bits (120), Expect = 9e-21 Identities = 179/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 |||||||||||||| ||||| |||| ||||| |||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1753 TTACAATTTGACTGCCAGT--CCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCT 1810 || ||||||||| |||| | || || || | | | | || | |||||| Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGA--ACTGTTGATAATGCTTTTTAA 2283 Query 1811 TTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTC 1870 ||| ||| || | ||| |||||||||||||||||| | | |||||||| || | Sbjct 2282 TTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTT 2223 Query 1871 TTGGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACA 1930 | || || |||| | || | | |||||||||||| || ||| ||| ||||| | Sbjct 2222 TCAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAA 2163 Query 1931 TCGTCTTCCCTGTTCT 1946 || || || |||| Sbjct 2162 CTGTTTTACCGATTCT 2147 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 |||||||||||||| ||||| ||| ||||| ||||||||||||||||| || |||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1753 TTACAATTTGACTGCCAGTCCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTTT 1812 || ||| | |||||| | ||| | | | | | || | ||||| || Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1813 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCTT 1872 | ||| | ||| | |||||| || |||||||||||| | || || || || | | Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 2101 Query 1873 GGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATC 1932 | || || |||| | ||| | | || || ||||||||||| | ||||||||| Sbjct 2100 GAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCT 2041 Query 1933 GTCTTCCCTGTTCTCGA 1949 || |||||| |||| || Sbjct 2040 GTTTTCCCTATTCTTGA 2024 >seq6801 Length=49729 Score = 93.3 bits (102), Expect = 7e-16 Identities = 179/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 1695 AGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTT 1754 |||| ||||||| ||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct 47096 AGGAGTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTT 47155 Query 1755 ACAATTTGACTGCCAGTCCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTTTAG 1814 |||||||||| ||| ||| || | | | | || | || ||| ||| Sbjct 47156 TGCATTTGACTGCTAGTTGCGCTGTATGCATACAAACTGTTGATAATGTTTTTTAATTAA 47215 Query 1815 ATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCTTGG 1874 ||| || |||||||||||||| |||||| | | |||||| | | | ||| Sbjct 47216 ATAAGCTGGAAGGACGTCATCAATGATATTATACCACGCGTCGTTCAAGAATGTTTTTGA 47275 Query 1875 GTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATCGT 1934 || || |||| | || | | |||||||||| | || ||| | | ||| | | || Sbjct 47276 ATTCAAATCCATAAAGCCCTTTATATAATTATGTAGACCCAACAAATGTGCCGAAACTGT 47335 Query 1935 CTTCCCTGTTCTCGAATCACCTTC 1958 || || |||| ||| ||||| Sbjct 47336 TTTACCGATTCTAGAAGGTCCTTC 47359 >seq4295 Length=67413 Score = 93.3 bits (102), Expect = 7e-16 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 1696 GGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTTA 1755 |||||| | ||||||||| ||||||| || |||||||||||| |||| || |||||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1756 CAATTTGACTGCCAGTCCTTCTGGCCCCAGAAAGA-TTCTTTCCAGTGCTTTAGCTTTAG 1814 |||||| | ||| | | |||| ||| || || ||||| || | ||| || | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGG-GCCACAATGAGCTCTTTTCAATATTTTTTCTGCAA 46725 Query 1815 ATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCTTGG 1874 ||| | | |||||||| || ||||| ||| | | |||||| | | | | Sbjct 46724 ATAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA 46665 Query 1875 GTTGAAGTCCA-GATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATCG 1933 || || |||| || | ||| || | || |||||||||| ||| | || ||||| || | Sbjct 46664 ATTAAAATCCATGAAGCCCATTATG-TAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1934 TCTT 1937 |||| Sbjct 46605 TCTT 46602 >seq1010 Length=204159 Score = 91.5 bits (100), Expect = 2e-15 Identities = 176/253 (70%), Gaps = 5/253 (2%) Strand=Plus/Minus Query 1697 GATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTTAC 1756 ||||||| |||||||| || |||| | ||||||||| |||||| || ||||||||| Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1757 AATTTGACTGCCAGTCCTTCTGGCCCCAGAAAGAT-TCTTTCCAGTGCTTTAGCTTT-AG 1814 |||||| ||||| | | |||| ||| || || |||||||| || ||| || | Sbjct 40854 CATTTGATTGCCAATTGTACTGGACCCT-AATGAGCTCTTTCCAATGATTTTTTTTGCAA 40796 Query 1815 ATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCTTGG 1874 ||| | | |||||||| || || |||||| | | |||||| | | ||| Sbjct 40795 ATAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTGA 40736 Query 1875 GTTGAAGTCCA-GATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATCG 1933 || || || | || | ||| || | || |||||||||||||| | || |||| || | Sbjct 40735 ATTAAAATCTATGAAGCCCATTATG-TAGTTATGTGGGCCTAAAGATCGTTCCCATATTG 40677 Query 1934 TCTTCCCTGTTCT 1946 |||| || |||| Sbjct 40676 TCTTTCCAATTCT 40664 >seq22495 Length=567 Score = 87.8 bits (96), Expect = 3e-14 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 |||||||||||||| ||||| | | ||||| | ||||||||||||||| || |||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1753 TTACAATTTGACTGCCAGTCCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTTT 1812 || ||| | |||||||| ||| | | | | | || || ||||| || Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1813 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCTT 1872 | ||| | ||| | || |||||| |||||||||||| | || || || || | | Sbjct 247 AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 188 Query 1873 GGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGA 1923 | || || |||| | ||| | | || || ||||||||||| | |||| Sbjct 187 GAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq5493 Length=32325 Score = 87.8 bits (96), Expect = 3e-14 Identities = 116/155 (75%), Gaps = 7/155 (5%) Strand=Plus/Minus Query 1696 GGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTTA 1755 |||||||| | ||| || ||| ||| || | ||||||||||||||| || |||||||| Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1756 CAATTTGACTGCCAGTCCTTCTG-GCCCCAGAAAGATTCTTTCCAG-TGCTTTAGCTTTA 1813 |||||| ||||||| | || | || | || ||||||||| | |||| || | Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAG-CTCTTTCCAGCTTCTTT-GC---A 31445 Query 1814 GATATTGCGGTGCGACGTCATCAATGACGTTATAC 1848 ||||| ||||| ||||||||||||| ||| ||| Sbjct 31444 GATATGTCGGTGATACGTCATCAATGATGTTGTAC 31410 >seq54129 Length=2260 Score = 86.0 bits (94), Expect = 1e-13 Identities = 173/257 (67%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 |||||||||||||| ||||| ||| ||||| ||||||||||||| ||| || |||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1753 TTACAATTTGACTGCCAGTCCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTTT 1812 || ||| | ||| |||| | ||| | | | | | || | ||||| || Sbjct 2197 TTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAATT 2138 Query 1813 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCTT 1872 | ||| | ||| | ||| || || |||||||||||| || || || || || | | Sbjct 2137 AAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTTG 2078 Query 1873 GGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATC 1932 | || || | || | ||| | | || || ||| ||| ||| | ||||||||| Sbjct 2077 GAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCATGCT 2018 Query 1933 GTCTTCCCTGTTCTCGA 1949 || || ||| |||| || Sbjct 2017 GTTTTTCCTATTCTTGA 2001 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 5e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 |||||||||||||| ||||| ||| ||||| ||||||||||||||| | || |||||| Sbjct 2374 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCGTAC 2433 Query 1753 TTACAATTTGACTGCCA 1769 || ||| | |||||| Sbjct 2434 TTTGCATTGGCCTGCCA 2450 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 5e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 |||||||||||||| ||||| ||| ||||| ||||||||||||||||| || |||||| Sbjct 20827 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 20768 Query 1753 TT 1754 || Sbjct 20767 TT 20766 >seq490 Length=137872 Score = 77.0 bits (84), Expect = 5e-11 Identities = 178/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 1698 ATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTTACA 1757 |||||| || || |||||||| || || ||||||||||| | |||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1758 ATTTGACTGCCAGTCCTTC-TGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTTTAGAT 1816 || | |||||| | | |||||||| ||| || |||| ||||| | ||| Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAG-CTCCCTCCAATGCTTCTTCCAGAGAG 70500 Query 1817 ATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATA-GACTCTTGGG 1875 || || | ||||||||| |||||||||||| || || ||| | | || || Sbjct 70499 ATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCT-TTCTA 70441 Query 1876 TTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATCGTC 1935 ||||| |||| | || ||| ||||||||||| || || | |||||| ||| Sbjct 70440 TTGAAATCCATAACGCCCATAAAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAGTC 70381 Query 1936 TTCCCTGTTCTCGAATCACCTTC 1958 ||||| ||| || |||||| Sbjct 70380 TTCCCAAGTCTAGATGGACCTTC 70358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8241753831220