Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004673.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq3283 111 3e-21 seq5745 102 1e-18 seq3439 100 5e-18 seq33 100 5e-18 seq77518 98.7 2e-17 seq1993 87.8 3e-14 seq35612 84.2 4e-13 seq4104 84.2 4e-13 seq22495 82.4 1e-12 seq80468 78.8 2e-11 seq30129 78.8 2e-11 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 228/333 (68%), Gaps = 12/333 (4%) Strand=Plus/Minus Query 1593 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCCAGATA 1652 |||| ||||||||| || || ||| | |||| || ||| || ||| |||| | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1653 CTCTTTATAGCTAGCGTTGGGCCCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTT 1712 | ||||||| | || ||||||||||| || | ||| |||| || || ||||| Sbjct 2302 CGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 2243 Query 1713 AATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAA 1772 |||||||||||| ||||||||||||| |||| ||||| | | || || || | ||| Sbjct 2242 AATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA 2183 Query 1773 CTCTTTAAAGTGCT------TGAGGAAGTGCGGATCTACGCCATCAATGACGTTATACCA 1826 || || | | |||| | | | | |||| ||| | || |||||||||||||| Sbjct 2182 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCA 2123 Query 1827 AGCGTCGTTACTGTACACCTTTGGGCTT-AGATC--TAGATGCCCACATAAATAATTATG 1883 || || || |||| ||||| || | ||| || || |||| || || || || Sbjct 2122 TGCATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTG 2066 Query 1884 TGGGCCTAAAGACCTAGCCCACATTGTCTTCCC 1916 ||||||||| || | |||||| ||| ||||| Sbjct 2065 TGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq5745 Length=45059 Score = 102 bits (112), Expect = 1e-18 Identities = 177/250 (71%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 1674 CCCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1733 |||||||||||| | | ||| ||| || |||||||||||||||||||| || ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1734 CTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAG 1790 ||||| || || ||||| | | ||| || || ||||||| || ||| | | || | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1791 GAAGT--GC-GGATCTACGCCATCAATGACGTTATACCAAGCGTCGTTACTGTACACCTT 1847 || | || ||| | | ||||||||||||||||||| |||||||| || || Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1848 TGGGCTTAGATCTA-GATGCCCACATAAATAATTATGTGGGCCTAAAGACCTAGCCCACA 1906 | | | ||| | | ||||| || |||||||||||| || || || | ||||| | Sbjct 43720 CGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAA 43778 Query 1907 TTGTCTTCCC 1916 ||| || || Sbjct 43779 CTGTTTTACC 43788 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 225/332 (68%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 1594 AATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCCAGATAC 1653 ||| ||||||||| || || ||| | |||| || ||| || ||| || | || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1654 TCTTTATAGCTAGCGTTGGGCCCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTTA 1713 ||||||| | || ||| ||||||| || | ||| |||| || || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1714 ATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAAC 1773 ||||||||||| || |||||||||| ||||| ||||| | | || || || | |||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1774 TCTTTAAAGTGCT------TGAGGAAGTGCGGATCTACGCCATCAATGACGTTATACCAA 1827 | || | | |||| | | | | |||| || |||| |||||||||||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1828 GCGTCGTTACTGTACACCTTTGGGCTT-AGATC--TAGATGCCCACATAAATAATTATGT 1884 || || || |||| ||||| || | ||| || || |||| || || || ||| Sbjct 801 GCATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGT 745 Query 1885 GGGCCTAAAGACCTAGCCCACATTGTCTTCCC 1916 |||||||| || | |||||| ||| ||||| Sbjct 744 GGGCCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 177/251 (71%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 1593 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCCAGATA 1652 |||| ||||||| | ||||| ||||| |||| || ||| || || || | | Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1653 CTCTTTATA-GCTAGCGTTGGGCCC-AGGATTGCAGAGGAAGATTGTTGGTATTCCACCT 1710 | ||||||| | | | ||| ||| ||||||||| || | ||| ||| || || | | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1711 TTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATG 1770 |||||||||||||| || |||||||||| || || ||||||| | || | || | | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1771 AACTCTT--TAAAG-TGCTTGAGGAAGT--GC-GGATCTACGCCATCAATGACGTTATAC 1824 |||| || ||| | | || | || | || ||| ||| ||||||||||||||||| Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATAC 403147 Query 1825 CAAGCGTCGTT 1835 || |||||||| Sbjct 403146 CACGCGTCGTT 403136 >seq77518 Length=14724 Score = 98.7 bits (108), Expect = 2e-17 Identities = 176/252 (70%), Gaps = 9/252 (4%) Strand=Plus/Minus Query 1593 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCCAGATA 1652 |||| ||||||||| ||||| ||||| ||| || ||| || || |||| | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1653 CTCTTTATA-GCTAGCGTTGGGCCC--AGGATTGCAGAGGAAGATTGTTGGTATTCCACC 1709 ||||||| | || ||| ||| ||||||||| || | ||| ||| || || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1710 TTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCAT 1769 |||||||||||||| || ||||||||| || || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1770 GAACTCTTTAAAGTGC---TTGAGGAAGT--GC-GGATCTACGCCATCAATGACGTTATA 1823 ||||| || | | ||| || | || | || ||| || |||||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATA 2246 Query 1824 CCAAGCGTCGTT 1835 ||| |||||||| Sbjct 2245 CCACGCGTCGTT 2234 >seq1993 Length=81530 Score = 87.8 bits (96), Expect = 3e-14 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1674 CCCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1733 |||||||||||| || | ||| ||| || || |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1734 CTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAG 1790 ||||| || || ||||| | | ||| || | | ||||| || ||| | | || | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1791 GAAGT--GC-GGATCTACGCCATCAATGACGTTATACCAAGCGTCGTT 1835 || | || ||| ||| ||||||||||||||||||| |||| ||| Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq35612 Length=1588 Score = 84.2 bits (92), Expect = 4e-13 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1593 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCCAGATA 1652 |||| ||||||||| || || ||| | |||| || ||| || ||| |||| | Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1653 CTCTTTATAGCTAGCGTTGGGCCCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTT 1712 ||||||| | || ||||||||||| || | ||| |||| || || ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1713 AATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCA 1751 |||||||||||| || |||||||||| ||||| ||||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 84.2 bits (92), Expect = 4e-13 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1593 GAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCCTCGTCCAGATA 1652 |||| ||||||||| || || ||| | |||| || ||| || ||| |||| | Sbjct 20909 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20850 Query 1653 CTCTTTATAGCTAGCGTTGGGCCCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTT 1712 | ||||||| | ||| ||||||||||| || | ||| |||| || || ||||| Sbjct 20849 CGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20790 Query 1713 AATTTGAACTGGCTTCCCGTACTTTG 1738 |||||||||||| || |||||||||| Sbjct 20789 AATTTGAACTGGTTTTCCGTACTTTG 20764 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1672 GGCCCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTTAATTTGAACTGGCTTCCCG 1731 || ||||||||||| || | ||| || | || || | ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1732 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1786 ||||||| |||| ||||||| | || || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1787 -TGAGGAAGTGCGGATCTACGCCATCAATGACGTTATACCAAGCGTCGTT 1835 | | | | |||| | | |||| |||||||||||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 116/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 1584 GAGAAAGACGAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAGTTCTTTTCC-T 1642 || |||| |||| ||||||||| ||||| ||| | |||| || ||| || ||| | Sbjct 4178 GACAAAGTAGAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCAT 4237 Query 1643 CGTCCAGATACTCTTTATAGCTAGCGTTGGGCCCAGGATTGCAGAGGAAGATTGTTGGTA 1702 || ||| | ||||||| | || ||| ||||||| || | ||| |||| | Sbjct 4238 ATTCAAGAATGT-TTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAA 4296 Query 1703 TTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGG 1744 |||| |||||||| ||||| || || ||||||||||| |||| Sbjct 4297 TTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTGG 4338 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1672 GGCCCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTTAATTTGAACTGGCTTCCCG 1731 || ||||||||||| || | ||| |||| || || ||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1732 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1787 ||||||| |||| ||||| | | || || || | ||||| || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8647767305450