Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004674.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value seq5745 111 3e-21 seq3283 96.9 6e-17 seq54129 82.4 1e-12 seq3059 80.6 5e-12 seq35612 78.8 2e-11 seq4104 77.0 6e-11 >seq5745 Length=45059 Score = 111 bits (122), Expect = 3e-21 Identities = 195/282 (69%), Gaps = 13/282 (5%) Strand=Plus/Plus Query 1702 AACTCTTTATATGATGATGTTGGTCCT---GGATTGCAGAGGAAGATAGTGGGAATGCCG 1758 ||| ||||||| ||| | ||| || |||||||| | | |||| ||||| || Sbjct 43514 AACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCA 43573 Query 1759 CCTTTAATTTGAATTGGCTTCCCGTATTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCC 1818 ||||||||||||| ||| || ||||| |||| ||| ||||| | | ||| || || Sbjct 43574 CCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCT 43633 Query 1819 ATGAATTCTT--TGAAGTGTTTGAGGTA------GTGGGGGTCGACGTCATCAATGACGT 1870 ||||| | || | | || ||| | || ||| || || |||||||||||||| Sbjct 43634 ATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAATGACGT 43691 Query 1871 TGTACCATGCGTCGTTTGAATATACCTTGGGAGACAGATCCAGGTGTCCACAAAGATAAT 1930 | |||||||||||||| || ||| || | | || ||||| || | ||||| Sbjct 43692 TATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAAT 43751 Query 1931 TATGGGGTCCCAGTGAACGAGCCCACATTGTTTTGCCGGTTC 1972 |||| || |||| ||||| ||||| | |||||| ||| ||| Sbjct 43752 TATGTGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTC 43793 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 190/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 1696 TCCAGAAACTCTTTATATGAT-GATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1754 |||| ||| |||||| ||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1755 GCCGCCTTTAATTTGAATTGGCTTCCCGTATTTTGTATTGCTTTGCCAGTCCCTTTGGGC 1814 |||||||||||||||| ||| |||||||| |||| |||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1815 CCCCATGAATTCTTTGAAGTGTT------TGAGGTAGTGGGGGTCGACGTCATCAATGAC 1868 || | ||| | || | || | | | || | || |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1869 GTTGTACCATGCGTCGTTTGAATATACCTTGGGAGACAGATCCAGGTGTCCACAAAGATA 1928 ||| |||||||| || ||||| || |||| | | ||||| ||| | || Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072 Query 1929 ATTATGGGGTCCCAGTGAACGAGCCCACATTGTTTTGCC 1967 || || || || | |||||||||||| |||||| || Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 124/177 (70%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1723 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGCTTCCCG 1782 ||||| |||||||| || | |||| | ||||| |||||||||||||||||||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1783 TATTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTT----- 1837 || |||| |||| || |||| || || || | ||| | || | | || | Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1838 -TGAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTTGAATAT 1893 | | || | || ||| || || |||||||| |||||| | || ||||| ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT 2084 >seq3059 Length=182465 Score = 80.6 bits (88), Expect = 5e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 1723 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGCTTCCCG 1782 ||||| |||||||| || | |||| | ||||| |||||||||||||||||||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1783 TATTTTGTATTG 1794 || |||| |||| Sbjct 20359 TAATTTGCATTG 20348 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1707 TTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAAT 1766 |||||| ||| | ||||| |||||||| || | |||| | ||||||||||||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1767 TTGAATTGGCTTCCCGTATTTTGTATTGCTTTGCCA 1802 ||||| ||| || ||||| |||| ||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1696 TCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATG 1755 |||| ||| |||||| ||| | ||||| |||||||| || | |||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1756 CCGCCTTTAATTTGAATTGGCTTCCCGTATTTTGTAT 1792 |||||||||||||||| ||| || ||||| |||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8836140318900