Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004675.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq3283 109 1e-20 seq3439 107 3e-20 seq54129 100 5e-18 seq22495 100 5e-18 seq35612 82.4 1e-12 seq77518 80.6 5e-12 seq490 80.6 5e-12 >seq3283 Length=49157 Score = 109 bits (120), Expect = 1e-20 Identities = 172/242 (71%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 1693 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCG 1752 || || |||||||| || | |||| | ||||| |||||||||||||||| |||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1753 TACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCT----- 1807 ||||| | ||| ||||| | | || || || | ||| | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1808 -TTAGGTAATGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATACC 1866 ||| |||| |||| ||||| || |||||||||||||| || ||||| || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA-CGT 2105 Query 1867 TTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTTGCCCTAATGATCTAGCC 1923 |||||| || || || ||||| || || ||| || ||| | |||||||| | |||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1924 CA 1925 || Sbjct 2046 CA 2045 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 181/258 (70%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 1677 TTTATATGAGGATGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAAT 1736 |||||| || || || || ||||||| || | |||| | ||||| ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1737 TTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTC 1796 ||||| |||||| |||||||| | |||| ||||| | | || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1797 CTTCCAGTGCT------TTAGGTAATGCGGATCTACGTCATCAATGACGTTATACCAAGC 1850 | | |||| ||| |||| |||| || ||||| |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1851 GTCATTAGAATATACCTTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTTG 1907 ||||| || || |||||| || || || ||||| || || ||| || ||| | Sbjct 799 ATCATTTGAGTA-CGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGG 743 Query 1908 CCCTAATGATCTAGCCCA 1925 |||||||| | |||||| Sbjct 742 GCCTAATGAACGAGCCCA 725 >seq54129 Length=2260 Score = 100 bits (110), Expect = 5e-18 Identities = 170/242 (70%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 1693 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCG 1752 || || |||||||| || | |||| | ||||| ||||||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1753 TACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCT----- 1807 ||||| | ||| || |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1808 -TTAGGTAATGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATACC 1866 ||| |||| |||| || || || |||||||||||||| | ||||| || ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GT 2082 Query 1867 TTTGGACTT--AAGTC-TAAATGACCACATAAGTAATTATGTTGCCCTAATGATCTAGCC 1923 |||||| || || || ||||| || || ||| || ||||| | |||||| | |||| Sbjct 2081 TTTGGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCC 2024 Query 1924 CA 1925 || Sbjct 2023 CA 2022 >seq22495 Length=567 Score = 100 bits (110), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 1693 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCG 1752 || || |||||||| || | |||| | |||| |||| ||||||||||| |||||| ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1753 TACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCT----- 1807 ||||| | ||| ||||||| | || || || | ||| | | || |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1808 -TTAGGTAATGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATACC 1866 ||| |||| |||| | |||||| |||||||||||||| || ||||| || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA-CGT 192 Query 1867 TTTGGACTT-AAGTCTAAATGACCACATAAGTAATTATGTTGCCCTAATGA 1916 |||||| || || || ||| || || ||| || ||| | |||||||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1693 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCG 1752 || || |||||||| || | |||| | |||||||||||||||||||||| |||||| ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1753 TACTTCGTGTTGCTTTGCCA 1772 ||||| | |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 169/250 (68%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 1696 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCGTAC 1755 || |||||||| || | |||| ||||| |||||||||||||||| || ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1756 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCT------TT 1809 || | || || |||| | ||| || || | ||| | | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1810 AGGTAATGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATACCTTT 1869 | ||| ||| || |||||||||||||||||||| ||||| || || ||| || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1870 GGACTTAAGTCTA-AATGACCACATAAGTAATTATGTTGCCCTAATGATCTAGCCCAAAT 1928 | | || || | || | ||| || ||||||||| | || || | | ||||||| Sbjct 2220 AAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCAAAC 2162 Query 1929 AGTTTTGCCG 1938 ||||| ||| Sbjct 2161 TGTTTTACCG 2152 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 5e-12 Identities = 163/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 1701 ATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCGTACTTCGT 1760 |||||| |||| || | || || || ||||||||||| ||||| || | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1761 GTTGCTTTGCCAGTCCCTTTG---GGCCCCAAAGAATTCCTTCCAGTGCTTT----AGGT 1813 | ||||||| || || |||||||| | ||| |||| ||||| || Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1814 A-ATGC-GGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATACCTTTGG 1871 | |||| ||| |||||||| |||||||||||||| | ||||| ||| || |||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCT 70442 Query 1872 ACTTAAGTCTA-AATGACCACATAAGTAATTATGTTGCCCTAATGATCTAGCCCA 1925 | | || || | || | ||| | |||||||||||| | || || ||||||||| Sbjct 70441 ATTGAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCA 70388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8730643708725