Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_004824.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq3439 80.6 5e-12 >seq3439 Length=62978 Score = 80.6 bits (88), Expect = 5e-12 Identities = 161/239 (67%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1671 GGTCCTTTATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATCATGACTGGCTTTCCG 1730 ||||| |||||| || | |||| | || || || |||||||| ||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1731 TATTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTT---- 1786 || || | |||| ||||| | || || || || | ||| | || | ||||||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1787 --TAGGTAGTGCGGGTCGACGTCATCAATGACGTTGTACCAAGCTTCATTATTGTACACT 1844 || || | ||| ||| ||||| |||||||| ||||| || ||||| |||| | Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1845 CTCGGGCTCAGATCCAGATGACCGCATAGATAATTGTGTGGGCCTAAAGACCTGGCCCA 1903 | | | | ||||| | || || || |||||||||||||| || | ||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8657358174920