Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005031.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq3283 125 1e-25 seq3439 120 5e-24 seq5745 100 5e-18 seq22495 98.7 2e-17 seq77518 95.1 2e-16 seq33 91.5 3e-15 seq953 89.7 9e-15 seq4104 87.8 3e-14 seq35612 84.2 4e-13 seq54129 82.4 1e-12 seq3059 78.8 2e-11 seq815 77.0 6e-11 >seq3283 Length=49157 Score = 125 bits (138), Expect = 1e-25 Identities = 233/336 (69%), Gaps = 16/336 (5%) Strand=Plus/Minus Query 1609 GAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTA 1668 |||||||||||| | || || ||| ||| | ||||| ||| |||||| | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1669 CTCTTTATATGAT-GATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTT 1727 | |||||| ||| ||| || || ||||||||||| | |||| |||| || || |||| Sbjct 2302 CGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTT 2244 Query 1728 TAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1787 ||||||||| ||||||||||||||| | ||| ||||| | | || || || | || Sbjct 2243 TAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGA 2184 Query 1788 ATTCTTTAAAGTGCT------TTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACC 1841 | | || | | |||| |||| || | || |||||| || |||||||| |||| Sbjct 2183 ACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACC 2124 Query 1842 AGGCATCATTGCTGTATACCTTTGGG--CTCAGATC--TAAATGACCGCACAAATAATTA 1897 | |||||||| || ||| ||| || | | ||| ||||| || | || || Sbjct 2123 ATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTG 2068 Query 1898 TGTGGGCCTAAAGAACGAGCCCACATCGTCTTCCCT 1933 ||||||||||| ||||||||||| || |||||| Sbjct 2067 TGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 120 bits (132), Expect = 5e-24 Identities = 229/334 (69%), Gaps = 14/334 (4%) Strand=Plus/Minus Query 1610 AATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTAC 1669 ||||||||||| | || || ||| ||| | ||||| ||| || ||| || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1670 TCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTA 1729 |||||| ||| || || || |||||||||| | |||| |||| || || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1730 ATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1789 ||||||| |||||| |||||||| | |||| ||||| | | || || || | ||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1790 TCTTTAAAGTGCT------TTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAG 1843 | || | | |||| |||| || | || ||| ||||| |||||||| ||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1844 GCATCATTGCTGTATACCTTTGGG--CTCAGATC--TAAATGACCGCACAAATAATTATG 1899 |||||||| || ||| ||| || | | ||| ||||| || | || || || Sbjct 801 GCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTG 746 Query 1900 TGGGCCTAAAGAACGAGCCCACATCGTCTTCCCT 1933 ||||||||| ||||||||||| || |||||| Sbjct 745 TGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq5745 Length=45059 Score = 100 bits (110), Expect = 5e-18 Identities = 219/323 (68%), Gaps = 15/323 (5%) Strand=Plus/Plus Query 1610 AATTCTGCATTCTTTATAGCCCACTCTTT-TAATGCCGAATTCTTCTCTTCGTCCAAGTA 1668 ||||| ||||| | || || | || ||| |||| ||||| ||| || ||| | Sbjct 43457 AATTCAGCATTTTGTAAAGTCAACGATTTCTAATTT-GAATTTGAATCTATATCTAAGAA 43515 Query 1669 CTCTTTATATGATGATGTTGGGCCT---GGATTGCAAAGGAAGATAGTTGGGATTCCACC 1725 | ||||||| ||| | ||| || |||||||||| | |||| ||| || ||||| Sbjct 43516 CGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACC 43575 Query 1726 TTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1785 ||||||||||| |||||| |||||||| | || ||||| | | ||| || || || Sbjct 43576 TTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTAT 43635 Query 1786 GAATTCTT--TAAAGTGCTTTAAGTA------GTGGGGGTCGACGTCATCAATGACGTTG 1837 ||| | || ||| || ||||| || ||| || || ||||||||||||||| Sbjct 43636 GAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAATGACGTTA 43693 Query 1838 TACCAGGCATCATTGCTGTATACCTTTGGGCTCAGATCTAAATGACCGCACAAATAATTA 1897 ||||| || || || ||| || | ||| ||| | | || | ||||||| Sbjct 43694 TACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTA 43753 Query 1898 TGTGGGCCTAAAGAACGAGCCCA 1920 ||||| || || ||||| ||||| Sbjct 43754 TGTGGACCCAACGAACGTGCCCA 43776 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 174/252 (69%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 1672 TTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAAT 1731 |||||| ||| | || || ||||||||||| | |||| || | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1732 TTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1791 ||||| |||||| |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1792 TTTAAAGTGCT------TTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGC 1845 || | | |||| |||| || | || || |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1846 ATCATTGCTGTATACCTTTGGG--CTCAGATCTAAATGACCGCACAAATAATTATGTGGG 1903 |||||| || ||| ||| || | | ||| ||| || | || || |||||| Sbjct 206 ATCATT--TGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGG 149 Query 1904 CCTAAAGAACGA 1915 ||||| |||||| Sbjct 148 CCTAATGAACGA 137 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 216/323 (67%), Gaps = 13/323 (4%) Strand=Plus/Minus Query 1609 GAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTA 1668 |||||||||||| | || || |||| |||| | ||||| ||| |||||| | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1669 CTCTTTATATGATGATGTTGGGCCT---GGATTGCAAAGGAAGATAGTTGGGATTCCACC 1725 ||||||| ||| | ||| || ||||||||||| | |||| ||| || || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1726 TTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1785 ||||||||||| || ||| ||||||| | || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1786 GAATTCTTTAAAGTGC--TTTAAGTA------GTGGGGGTCGACGTCATCAATGACGTTG 1837 ||| | || | | ||| ||||| || ||| || ||| |||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAATGACGTTA 2248 Query 1838 TACCAGGCATCATTGCTGTATACCTTTGGGCTCAGATCTAAATGACCGCACAAATAATTA 1897 ||||| || || || |||| || ||| ||| | | || | ||||||| Sbjct 2247 TACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATATAATTA 2188 Query 1898 TGTGGGCCTAAAGAACGAGCCCA 1920 ||||| || || |||| ||||| Sbjct 2187 TGTGGACCCAACTAACGTGCCCA 2165 >seq33 Length=454124 Score = 91.5 bits (100), Expect = 3e-15 Identities = 215/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 1609 GAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTA 1668 |||||||||||||| || || |||| ||| | ||||| ||| || ||| | Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1669 CTCTTTATATGATGATGTTGGGCCT--GGATTGCAAAGGAAGATAGTTGGGATTCCACCT 1726 | ||||||| || | ||| || ||||||||||| | |||| ||| || || | | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1727 TTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1786 |||||||||| |||||| |||||||| | || ||||||| | || | || | | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1787 AATTCTT--TAAAGTGCTTTAAGTA------GTGGGGGTCGACGTCATCAATGACGTTGT 1838 || | || ||| | ||||| || ||| || |||||||||||||||||| | Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTAT 403149 Query 1839 ACCAGGCATCATTGCTGTATACCTTTGGGCTCAGATCTAAATGACCGCACAAATAATTAT 1898 |||| || || || |||| | | ||| ||| | | || | ||||||| Sbjct 403148 ACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTAT 403089 Query 1899 GTGGGCCTAAAGAACGAGCCCA 1920 |||| || || ||||| ||||| Sbjct 403088 GTGGACCCAACGAACGTGCCCA 403067 >seq953 Length=224861 Score = 89.7 bits (98), Expect = 9e-15 Identities = 224/336 (67%), Gaps = 16/336 (5%) Strand=Plus/Plus Query 1609 GAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTA 1668 |||||||||||| | || || ||| ||| | ||||| ||| || ||| | Sbjct 1761 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCTAAGAA 1820 Query 1669 CTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTT 1728 |||||| ||| | || || |||||||||| | |||| |||| || || ||||| Sbjct 1821 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTT 1880 Query 1729 AATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1788 ||||||||||| ||| |||||||| | ||| ||||| | | || | || | ||| Sbjct 1881 AATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAA 1940 Query 1789 TTCTTTAAAGTGCT------TTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCA 1842 | || | | | || |||| || | || |||||| || || ||||| ||||| Sbjct 1941 CTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCA 2000 Query 1843 GGCATCATTGCTGTATACCTTT--GGGCTCAGATC--TAAATGACCGCA-CAAATAATTA 1897 |||||||| || ||| ||| | | | ||| ||||| | || | || || Sbjct 2001 TGCATCATT--TGAGTACGTTTTCGAATTAAAATCCATAAAT---CTCATTATGTAGTTG 2055 Query 1898 TGTGGGCCTAAAGAACGAGCCCACATCGTCTTCCCT 1933 ||||||||||| ||||||||||| || |||||| Sbjct 2056 TGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 >seq4104 Length=64936 Score = 87.8 bits (96), Expect = 3e-14 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1592 GGGCTGTTGAGGGTGACGAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTC 1651 ||| |||||| | | |||||||||||| | || || ||| ||| | ||||| Sbjct 20926 GGGGTGTTGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTG 20867 Query 1652 TTCTCTTCGTCCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATA 1711 ||| |||||| || |||||| ||| | || || ||||||||||| | |||| Sbjct 20866 GACTCCAAATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATA 20807 Query 1712 GTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTT 1752 |||| || || ||||||||||||| |||||| |||||||| Sbjct 20806 CTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 84.2 bits (92), Expect = 4e-13 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1609 GAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTA 1668 |||||||||||| | || || ||| ||| | ||||| ||| |||||| | Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1669 CTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTT 1728 |||||| ||| | || || ||||||||||| | |||| |||| || || ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1729 AATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCA 1767 |||||||| |||||| |||||||| | |||| ||||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1688 GGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1747 || || ||||||||||| | |||| |||| || || |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1748 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1802 ||||| | ||| || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1803 -TTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATT 1851 |||| || | || ||| || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 103/143 (72%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1661 TCCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATT 1720 |||||| || ||||| ||| | || || ||||||||||| | |||| |||| || Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1721 CCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCC 1780 || |||||||||||||||||||| ||||| || | ||| | ||||| | || || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCG 20327 Query 1781 CCCATGAATTCTTTAAAGTGCTT 1803 || | ||| | || | | ||||| Sbjct 20326 CCTACGAACTGTTGATAATGCTT 20304 >seq815 Length=151552 Score = 77.0 bits (84), Expect = 6e-11 Identities = 183/272 (67%), Gaps = 15/272 (6%) Strand=Plus/Minus Query 1672 TTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAAT 1731 |||||| ||| || || || ||||||||||| | ||| |||| || || |||||||| Sbjct 85439 TTTATAGGATAATCA-GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1732 TTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1791 |||| ||||| ||||||| | ||| | ||||| | || || || | ||| | Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1792 TTTAAAGTGCT------TTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGC 1845 || | | | || |||| || | | |||||| || |||||||| ||||| || Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1846 ATCATTGCTGTATACCTTTGGG--CTCAGATC--TAAATGACCGCACAAATAATTATGTG 1901 |||||| || ||| ||| || | | ||| ||||| || | || || |||| Sbjct 85260 ATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTG 85205 Query 1902 GGCCTAAAGAACGAGCCCACATCGTCTTCCCT 1933 |||||| |||||||||| | | |||||| Sbjct 85204 TGCCTAATAAACGAGCCCATGTTATTTTCCCT 85173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8689327739820