Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005319.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq3439 95.1 2e-16 seq3283 93.3 7e-16 seq4104 89.7 9e-15 seq35612 86.0 1e-13 seq22495 86.0 1e-13 seq30129 77.0 6e-11 seq3059 77.0 6e-11 >seq3439 Length=62978 Score = 95.1 bits (104), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 1664 TCCAAGAACTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1723 || |||||| ||||||| | | ||||| ||||||| || | |||| | ||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1724 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCC 1783 |||||||||||||||||||| |||||||| || | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1784 CCCATGAATTCCTTGA-AGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATCAC 1836 || | ||| | |||| | |||| ||| || | ||| ||| ||||| || || Sbjct 870 CCTACGAACT-GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1837 GTTGTACCAAGCATCATT 1854 ||| ||||| |||||||| Sbjct 811 GTTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 93.3 bits (102), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 10/199 (5%) Strand=Plus/Minus Query 1664 TCCAAGAACTCTTTATAGC-TAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1722 ||||||||| ||||||| | || | ||||| |||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1723 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1782 |||||||||||||||||||| || ||||| || | ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1783 CCCCATGAATTCCTTGA-AGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATCA 1835 || | ||| | |||| | |||| ||| || | ||| |||||| || || | Sbjct 2191 GCCTACGAACT-GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGA 2133 Query 1836 CGTTGTACCAAGCATCATT 1854 |||| ||||| |||||||| Sbjct 2132 CGTTATACCATGCATCATT 2114 >seq4104 Length=64936 Score = 89.7 bits (98), Expect = 9e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1664 TCCAAGAACTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1723 ||||||||| ||||||| | | |||||| |||||||| || | |||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1724 CCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1755 |||||||||||||||||||| |||||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1664 TCCAAGAACTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1723 |||||||| ||||||| | | ||||| |||||||| || | |||| | ||||| Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1724 CCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCA 1770 |||||||||||||||||||| |||||||| || | |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 123/171 (72%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 1691 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1750 ||||| |||||||| || | |||| | |||| |||| ||||||||||||||| |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1751 TATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGA-AGTGCT---- 1805 || || | ||| ||||||| | || || || | ||| | |||| | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT-GTTGACAATGCTTCTT 252 Query 1806 --TTAGGTAGTGGGGATCGACGTCATCAATCACGTTGTACCAAGCATCATT 1854 ||| || | ||| || |||||| || ||||| ||||| |||||||| Sbjct 251 AATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1664 TCCAAGAACTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1723 ||||||||| ||| ||| | | ||||| |||||||| || | |||| | ||||| Sbjct 2344 TCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2403 Query 1724 CCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1755 |||||||||||||||||| | |||||||| || Sbjct 2404 CCGCCTTTAATTTGAACTCGTTTTCCGTACTT 2435 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1664 TCCAAGAACTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1723 ||||||||| ||||| | | | ||||| |||||||| || | |||| | ||||| Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1724 CCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1755 |||||||||||||||| ||| |||||||| || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATT 20355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8670146000880