Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005320.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq3439 93.3 7e-16 seq22495 91.5 3e-15 seq3283 87.8 3e-14 seq5745 84.2 4e-13 seq77518 78.8 2e-11 seq35612 78.8 2e-11 seq33 78.8 2e-11 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1666 TTTATAGCTTGAGTTGGGCCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAAT 1725 ||||||| | | | || || ||||||| || | |||| ||||| || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1726 TTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1785 |||||| || ||||||||||||| |||| ||||| | | || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1786 TTTAAAATGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGC 1839 || | |||||| ||| || | |||| || ||||| |||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1840 GTCATT 1845 ||||| Sbjct 799 ATCATT 794 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1655 TCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCATAGGAAGATAGCGGGAATG 1714 |||| | || ||||||| | | | || || |||||||| || | |||| |||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1715 CCACCTTTAATTTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1774 || | |||||||||||| || ||||||||||||| ||| ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1775 CCCATGAATTCTTTAAAATGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACG 1828 || | ||| | || | |||||| ||| || | |||| | |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1829 TTGTACCAGGCGTCATT 1845 || ||||| || ||||| Sbjct 217 TTATACCATGCATCATT 201 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 1666 TTTATAGC-TTGAGTTGGGCCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAA 1724 ||||||| |||| | || || |||||||| || | |||| ||||| || ||||||| Sbjct 2299 TTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAA 2241 Query 1725 TTTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATT 1784 ||||||| || || |||||||||| ||| ||||| | | || || || | ||| | Sbjct 2240 TTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT 2181 Query 1785 CTTTAAAATGCT------TTAGGTAGTGCGGATCTACGTCATCAATGACGTTGTACCAGG 1838 || | |||||| ||| || | |||| ||||| || |||||||| ||||| | Sbjct 2180 GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATG 2121 Query 1839 CGTCATT 1845 | ||||| Sbjct 2120 CATCATT 2114 >seq5745 Length=45059 Score = 84.2 bits (92), Expect = 4e-13 Identities = 119/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 1684 CCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACAGGCTTTCCGTA 1743 ||| |||||||| | | |||| ||||| ||||||||||||||||| || || ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1744 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT------T 1797 ||||| || ||||| | | ||| || || ||||| | || | |||| | | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1798 TAGGTAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCGTCATT 1845 || || ||| | ||||||||||||||| ||||| ||||| || Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq77518 Length=14724 Score = 78.8 bits (86), Expect = 2e-11 Identities = 118/168 (70%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1684 CCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACAGGCTTTCCGTA 1743 ||| |||||||| || | |||| ||||| || |||||||||||||| | ||| |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1744 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT------T 1797 ||||| || || |||| | ||| || || | ||| | || | |||||| | Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1798 TAGGTAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCGTCATT 1845 || || ||| || |||||||||||||| ||||| ||||| || Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1666 TTTATAGCTTGAGTTGGGCCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAAT 1725 ||||||| | | | || || |||||||| || | |||| |||||||| |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1726 TTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCA 1761 |||||| || ||||||||||||| |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq33 Length=454124 Score = 78.8 bits (86), Expect = 2e-11 Identities = 118/168 (70%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1684 CCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACAGGCTTTCCGTA 1743 ||| |||||||| || | |||| ||||| || | |||||||||||| || |||||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1744 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT------T 1797 ||||| || ||||||| | || | || | ||| | || | |||| | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1798 TAGGTAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCGTCATT 1845 || || ||| ||||||||||||||||| ||||| ||||| || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8644570348960