Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005321.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq3283 96.9 6e-17 seq3439 95.1 2e-16 seq22495 80.6 5e-12 seq5745 80.6 5e-12 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 194/282 (69%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 1651 ATTCAAGTACTCTTTATATGAT-GATGTTGGGCCTGGATTGCATAGGAAGATAGTTGGGA 1709 || |||| || |||||| ||| ||| || || |||||||| || | |||| |||| | Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAA 2253 Query 1710 TTCCACCTTTAATTTGAATGGCTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGG 1769 | || ||||||||||||| | |||||||||||| | ||| ||||| | | || | Sbjct 2252 TCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTG 2193 Query 1770 CCCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGA 1823 | || | ||| | || | | |||| ||| ||| | || ||||| || |||| Sbjct 2192 CGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGA 2133 Query 1824 CGTTATACCAAGCATCATTACTGTATAC-TTTTGGGCTT-AGATCAAGATGTCCACACAA 1881 |||||||||| |||||||| || ||| |||||| || | ||| | | ||| | Sbjct 2132 CGTTATACCATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTAT 2075 Query 1882 ATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1923 || |||||||| || | ||| | ||||| |||||| || Sbjct 2074 GTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 95.1 bits (104), Expect = 2e-16 Identities = 189/277 (68%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 1655 AAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCATAGGAAGATAGTTGGGATTCCA 1714 ||| || |||||| ||| || || || ||||||| || | |||| |||| || || Sbjct 987 AAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCG 928 Query 1715 CCTTTAATTTGAATGGCTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCC 1774 ||||||||||||| | ||| |||||||| | |||| ||||| | | || || || Sbjct 927 CCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCT 868 Query 1775 ATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTA 1828 | ||| | || | | |||| ||| ||| | || || ||||| ||||||||| Sbjct 867 ACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTA 808 Query 1829 TACCAAGCATCATTACTGTATAC-TTTTGGGCTT-AGATCAAGATGTCCACACAAATAAT 1886 ||||| |||||||| || ||| |||||| || | ||| | | ||| | || | Sbjct 807 TACCATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGT 750 Query 1887 TGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1923 ||||||| || | ||| | ||||| |||||| || Sbjct 749 TGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq22495 Length=567 Score = 80.6 bits (88), Expect = 5e-12 Identities = 129/186 (69%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1663 TTTATATGATGATGTTGGGCCTGGATTGCATAGGAAGATAGTTGGGATTCCACCTTTAAT 1722 |||||| ||| | || || |||||||| || | |||| || | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1723 TTGAATGGCTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1782 ||||| | ||| |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1783 TTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGC 1836 || | | |||| ||| ||| | || | |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1837 ATCATT 1842 |||||| Sbjct 206 ATCATT 201 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 5e-12 Identities = 187/280 (67%), Gaps = 13/280 (5%) Strand=Plus/Plus Query 1655 AAGTACTCTTTATATGATGATGTTGGGCCT---GGATTGCATAGGAAGATAGTTGGGATT 1711 ||| || ||||||| ||| | ||| || |||||||| | | |||| ||| || Sbjct 43511 AAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATC 43570 Query 1712 CCACCTTTAATTTGAATGGCTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCC 1771 |||||||||||||||| | ||| |||||||| | || ||||| | | ||| || Sbjct 43571 CCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCT 43630 Query 1772 CCCATGAATTCTT--TAAAGTGCTTTAGATA------GTGGGGGTCTACGTCATCAATGA 1823 || ||||| | || ||| || |||| || ||| || | ||||||||||| Sbjct 43631 CCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAATGA 43688 Query 1824 CGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAAT 1883 |||||||||| || || || ||| ||| | | | ||| | | || | || Sbjct 43689 CGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATAT 43748 Query 1884 AATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1923 |||| ||||| |||| || | ||||| | ||||||||| Sbjct 43749 AATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8686130783330