Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005330.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq1993 96.9 6e-17 seq3439 95.1 2e-16 seq490 95.1 2e-16 seq3283 93.3 7e-16 seq33 91.5 2e-15 seq1010 86.0 1e-13 seq22495 84.2 4e-13 seq5745 84.2 4e-13 seq54129 80.6 4e-12 >seq1993 Length=81530 Score = 96.9 bits (106), Expect = 6e-17 Identities = 193/279 (69%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 1623 TCTCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCG 1682 || ||||||||||| |||||||| | || | ||| ||| ||| | || || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1683 TACTT-GCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTG--TTTC 1739 ||||| ||| |||| |||||| || |||| || | ||| | || || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1740 AACTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTCCAC-TTGATCAGAATA 1798 || ||| ||| |||| |||||||||||||||||||||| | | ||| || || || Sbjct 74287 AA--TTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTC-GATTA 74231 Query 1799 TACCTTTGAGTTGAAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGC 1858 | || || || ||||||| | ||| | | ||||||||||| || || | | | Sbjct 74230 TGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGT 74171 Query 1859 CCACATCGTCTTGCCAGTTCGAGAACCACCTTCAACAAT 1897 ||| | || || || ||| |||| ||||||| ||| Sbjct 74170 CCAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAAT 74132 >seq3439 Length=62978 Score = 95.1 bits (104), Expect = 2e-16 Identities = 226/342 (66%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 1520 ATAGAGGGGGGCGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAAGCACGGAGCTG 1579 ||||||||||| ||||| |||| |||| ||||| || || ||||||| | Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1580 TGCATTTTCCTCTTTGTCTAGGAAGTCTTTATAGCAGGCCCCCTCTCCAGGATTGCATAG 1639 || ||| ||| |||| ||| ||||||| | | |||| ||||||| || Sbjct 1006 TGAATTGGACTCCAAATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAG 947 Query 1640 CACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTACTTGCAGTTTGTCTG 1699 ||||| || | ||| |||| ||| | || ||||||||||| ||| | || Sbjct 946 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATG 887 Query 1700 CCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTTTAGGTAATGCGGAGC 1759 ||| ||| | || || ||||| | || || | || ||| ||| |||| ||||| Sbjct 886 CCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGG 827 Query 1760 GACGTCATCAATGACGTTATACTCCACTTGATCAGAATATACCTTTGAGTTGAAATCCAG 1819 ||| ||||| |||||||||||| | | || || || || || || ||||||| Sbjct 826 GACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAT 767 Query 1820 ATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCA 1861 | || | | ||| || ||||||||||||| | |||||| Sbjct 766 AAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq490 Length=137872 Score = 95.1 bits (104), Expect = 2e-16 Identities = 196/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 1631 ATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTACTTGCA 1690 ||||||||| || ||||| || | ||||||| ||| ||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1691 GTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTTTAGGTA 1750 | | ||||| | || | |||||| | ||||| |||| || ||| | || | Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1751 ATGC-GGAGCGACGTCATCAATGACGTTATACTCCACTTGA-TCA---GAATATACCTTT 1805 ||| |||| ||||||||| |||||||||||| | ||| ||| ||| || |||| Sbjct 70498 -TGCTGGAGGGACGTCATCTATGACGTTATAC----CATGACTCATTGGAAAATGTCTTT 70444 Query 1806 GAGTTGAAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCACATC 1865 |||||||||| | ||| | |||||||||||||| || || ||||||||| Sbjct 70443 CTATTGAAATCCATAACGCCCATAAAGTAATTATGTGGACCCAAACTTCTAGCCCATTCA 70384 Query 1866 GTCTTGCCAGTTCGAGAACCACCTTCAACAATTAAACTTATAGGCCT 1912 ||||| ||| || ||| |||||| | ||||||| || ||||| Sbjct 70383 GTCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCT 70337 >seq3283 Length=49157 Score = 93.3 bits (102), Expect = 7e-16 Identities = 228/343 (66%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 1520 ATAGAGGGGGGCGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAAGCACGGAGCTG 1579 |||| |||||| ||||| |||| ||||| ||||| || || ||||||| | Sbjct 2386 ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 2327 Query 1580 TGCATTTTCCTCTTTGTCTAGGAAGTCTTTATAGCAGGCCCCCTCTCCAGGATTGCATAG 1639 || ||| ||| || | ||| ||||||| | | |||||||||||| || Sbjct 2326 TGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAG 2267 Query 1640 CACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTACTT-GCAGTTTGTCT 1698 ||||| || | ||| |||| ||| | || || |||||||| ||| || | || Sbjct 2266 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCA-TTGGCCT 2208 Query 1699 GCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTTTAGGTAATGCGGAG 1758 |||| ||| | || || ||||| | || || | || ||| ||| |||| ||||| Sbjct 2207 GCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAG 2148 Query 1759 CGACGTCATCAATGACGTTATACTCCACTTGATCAGAATATACCTTTGAGTTGAAATCCA 1818 |||||| || |||||||||||| | | || || || || || || ||||||| Sbjct 2147 GGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCA 2088 Query 1819 GATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCA 1861 | || | | ||| || ||||||||||||| | |||||| Sbjct 2087 TAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq33 Length=454124 Score = 91.5 bits (100), Expect = 2e-15 Identities = 197/289 (68%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 1626 CCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTAC 1685 ||||||||||| |||||||| | || | ||| | || ||| | || ||||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1686 TT-GCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTG--TTTCAAC 1742 || ||| |||| |||||| || || | ||||| | || || | || ||| || Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAA- 403185 Query 1743 TTTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTCCACTTGATCAGAATATACC 1802 ||| ||| |||| |||||||||||||||||||||| | | | | || ||| Sbjct 403184 -TTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 403126 Query 1803 TTTGAGTTGAAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCAC 1862 | || || ||||||| | ||| | | |||||||||||| || || | | ||||| Sbjct 403125 CTCGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAA 403066 Query 1863 ATCGTCTTGCCAGTTCGAGAACCACCTTCAACAATTAAACTTATAGGCC 1911 | || || || ||| |||| ||||||| ||| | ||| | |||| Sbjct 403065 ACTGT-TTTTCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCC 403018 >seq1010 Length=204159 Score = 86.0 bits (94), Expect = 1e-13 Identities = 196/288 (68%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 1630 GATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTACTT-G 1688 ||||||| |||||||| | ||| | |||| ||| ||| || || |||||||| | Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1689 CAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTTTAGG 1748 || |||| ||||| || | ||| ||| | ||||||||||| || || ||| | Sbjct 40854 CA-TTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTT--TTTTGC 40798 Query 1749 TAATGCG---GAGCGACGTCATCAATGACGTTATACTCCACTTGATCAGAATATACCTTT 1805 ||| | ||| |||||||| || || |||||| | | || ||| || ||| Sbjct 40797 AAATAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTT 40738 Query 1806 GAGTTGAAATCCA-GATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCACAT 1864 || || ||||| | || | ||| | | ||| |||||||||||||| | || |||| || Sbjct 40737 GAATTAAAATCTATGAAGCCCATT-ATGTAGTTATGTGGGCCTAAAGATCGTTCCCATAT 40679 Query 1865 CGTCTTGCCAGTTCGAGAACCACCTTCAACAATTAAACTTATAGGCCT 1912 ||||| ||| ||| || |||||| | || ||| ||||||| Sbjct 40678 TGTCTTTCCAATTCTAGTTGGACCTTCTAATATGTGACTCTTAGGCCT 40631 Score = 77.0 bits (84), Expect = 5e-11 Identities = 199/294 (68%), Gaps = 16/294 (5%) Strand=Plus/Plus Query 1626 CCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCA-AACGAGGCTTTCCGTA 1684 || |||||||| |||||||| | |||| | ||| ||| ||| || || ||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGT-TTACCGTA 36542 Query 1685 CTTGCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTT 1744 |||| | || ||||| || || | ||||| | ||||||||||| | || || Sbjct 36543 CTTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAATTTT-----TT 36597 Query 1745 TAGGTAATGCG---GAGCGACGTCATCAATGACGTTATAC--TCCACTTGATCAGAATAT 1799 | | ||| | ||| || ||||| |||| |||||| | || || ||| ||| || Sbjct 36598 TTGCAAATAGGATCGAGACACATCATCTATGAAATTATACCATGCA-TTAATC-GAAAAT 36655 Query 1800 ACCTTTGAGTTGAAATCCA-GATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGC 1858 || || || ||||||| || | ||| | | ||| ||| |||||||||| | || || Sbjct 36656 GATTTCGAATTAAAATCCATGAAGCCCA-TTATGTAGTTACGTGGGCCTAAAGATCGTGC 36714 Query 1859 CCACATCGTCTTGCCAGTTCGAGAACCACCTTCAACAATTAAACTTATAGGCCT 1912 ||| || ||||| ||| ||| || ||||| | || | ||| ||||||| Sbjct 36715 CCATATTGTCTTCCCAATTCTAGCTGGGCCTTCTAATATGAGACTCTTAGGCCT 36768 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 220/333 (66%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 1520 ATAGAGGGGGGCGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAAGCACGGAGCTG 1579 ||||||||||| ||||| |||| ||||| |||| || | ||||||| | Sbjct 473 ATAGAGGGGGGTGTCGACGAAGTGGAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATA 414 Query 1580 TGCATTTTCCTCTTTGTCTAGGAAGTCTTTATAGCAGGCCCCCTCTCCAGGATTGCATAG 1639 || ||| ||| |||| ||| ||||||| | | |||||||||||| || Sbjct 413 TGAATTGGACTCCAAATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAG 354 Query 1640 CACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTACTT-GCAGTTTGTCT 1698 ||||| | | ||| | || ||| | || ||||||||||| ||| || | || Sbjct 353 TACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCA-TTGGCCT 295 Query 1699 GCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTTTAGGTAATGCGGAG 1758 |||| || | || || ||||| | || || || || ||| ||| |||| ||||| Sbjct 294 GCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAG 235 Query 1759 CGACGTCATCAATGACGTTATACTCCACTTGATCAGAATATACCTTTGAGTTGAAATCCA 1818 || |||||| |||||||||||| | | || || || || || || ||||||| Sbjct 234 GGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCA 175 Query 1819 GATGGCCACTGAAGTAATTATGTGGGCCTAATG 1851 | || | | ||| || ||||||||||||| Sbjct 174 AAAATCCTATTATGTAGTTGTGTGGGCCTAATG 142 >seq5745 Length=45059 Score = 84.2 bits (92), Expect = 4e-13 Identities = 243/372 (65%), Gaps = 13/372 (3%) Strand=Plus/Plus Query 1520 ATAGAGGGGGGCGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAAGCACGGAGCTG 1579 |||||| |||| ||||| |||| |||| |||||| || | ||| | | | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1580 TGCATTTTCCTCTTTGTCTAGGAAGTCTTTATAGCA-------GGCCCCCTCTCCAGGAT 1632 || |||| ||| | |||| ||| ||||||| | || |||| |||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGAT 43547 Query 1633 TGCATAGCACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTAC-TTGCAG 1691 |||| | |||||| | || | |||||||| ||| | || || |||||| ||||| Sbjct 43548 TGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA- 43606 Query 1692 TTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTTTAGGTAA 1751 |||| |||||| || ||| || |||| | || || | ||||| ||| ||| Sbjct 43607 TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAA 43666 Query 1752 TGCGGAGCGACGTCATCAATGACGTTATACTCCACTTGATCAGAATATACCTTTGAGTTG 1811 |||| || ||||||||||||||||||| | | | || ||| || || || Sbjct 43667 GCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTC 43726 Query 1812 AAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCACATCGTCTTG 1871 ||||||| | ||| | | ||||||||||| || || | | ||||| | || || Sbjct 43727 AAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTA 43786 Query 1872 CCAGTTCGAGAA 1883 || ||| |||| Sbjct 43787 CCGATTCTAGAA 43798 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 4e-12 Identities = 162/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 1625 TCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTA 1684 |||||||||||| || ||||| || | ||| |||| ||| | || |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1685 CTT-GCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACT 1743 ||| ||| || | ||| || || || || || ||||| | || || | || ||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1744 TTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTCCACTTGATCAGAATATACCT 1803 ||| |||| ||||| ||| || || |||||||||||| || | || || ||| | Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTT 2080 Query 1804 TTGAGTTGAAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCA 1861 | || || |||| || | || | | ||| || ||| ||| ||||| | |||||| Sbjct 2079 TGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8443162090090