Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= NC_005338.2
Length=2761
Score E
Sequences producing significant alignments: (Bits) Value
seq3439 136 7e-29
seq3283 136 7e-29
seq953 114 2e-22
seq815 114 2e-22
seq54129 113 8e-22
seq22495 98.7 2e-17
seq490 87.8 3e-14
>seq3439
Length=62978
Score = 136 bits (150), Expect = 7e-29
Identities = 219/315 (70%), Gaps = 6/315 (2%)
Strand=Plus/Minus
Query 1672 ATCAAGGAACTCTTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTAT 1731
||| | |||| ||||||||| | ||||| |||||||||| | ||| | || ||
Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932
Query 1732 CCCACCTTTAATTTGAGTGGGCTTACCGTATTTGATGTTGCTTTGCCAGTCCATCTGGGC 1791
||| |||||||||||| || || ||||| || |||| ||||| | ||| ||
Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872
Query 1792 CCCCATAAACTCTTTAAAATGCTT------TAGATAATGCGGATCAACGTCATCAATGAC 1845
|| | |||| || | ||||||| || ||||| |||| || ||||| |||||
Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812
Query 1846 GTTATACCAAGCATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCCACACATGTA 1905
||||||||| ||||||||||| | | || | ||| ||||| ||| |||||
Sbjct 811 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 752
Query 1906 ATTATGGACTCCTAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGCTCCTTCAAC 1965
|| || |||||||| || |||||| || |||||| |||||| || |||||||
Sbjct 751 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAAT 692
Query 1966 AACGATGCTCATCGG 1980
|| |||||||| ||
Sbjct 691 AATAATGCTCATGGG 677
>seq3283
Length=49157
Score = 136 bits (150), Expect = 7e-29
Identities = 219/315 (70%), Gaps = 6/315 (2%)
Strand=Plus/Minus
Query 1672 ATCAAGGAACTCTTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTAT 1731
||| | |||| ||||||||| | ||||| ||||||||||| | ||| | || ||
Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252
Query 1732 CCCACCTTTAATTTGAGTGGGCTTACCGTATTTGATGTTGCTTTGCCAGTCCATCTGGGC 1791
||| |||||||||||| || || ||||| || ||| ||||| | ||| ||
Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192
Query 1792 CCCCATAAACTCTTTAAAATGCTT------TAGATAATGCGGATCAACGTCATCAATGAC 1845
|| | |||| || | ||||||| || ||||| |||| ||||| || |||||
Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132
Query 1846 GTTATACCAAGCATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCCACACATGTA 1905
||||||||| ||||||||||| | | || | ||| ||||| ||| |||||
Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072
Query 1906 ATTATGGACTCCTAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGCTCCTTCAAC 1965
|| || |||||||| || |||||| || |||||| |||||| || |||||||
Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAAT 2012
Query 1966 AACGATGCTCATCGG 1980
|| |||||||| ||
Sbjct 2011 AATAATGCTCATGGG 1997
>seq953
Length=224861
Score = 114 bits (126), Expect = 2e-22
Identities = 207/303 (68%), Gaps = 6/303 (2%)
Strand=Plus/Plus
Query 1684 TTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAAT 1743
||||||||| || ||||| |||||||||| | ||| | || ||||| ||||||||
Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883
Query 1744 TTGAGTGGGCTTACCGTATTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTC 1803
|||| | | || ||||| || ||| ||||| | ||| | || | ||||
Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943
Query 1804 TTTAAAATGCT------TTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGC 1857
|| | ||| || ||| ||||| |||| ||||| || || ||||||||||| ||
Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003
Query 1858 ATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCCACACATGTAATTATGGACTCC 1917
||||||||| | | || | ||| ||||| || ||||| || || ||
Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCC 2063
Query 1918 TAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGCTCCTTCAACAACGATGCTCAT 1977
|||||| || |||||| || |||||| |||||| || ||||||| || ||||||||
Sbjct 2064 TAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGTGCCTTCAATAATAATGCTCAT 2123
Query 1978 CGG 1980
||
Sbjct 2124 GGG 2126
>seq815
Length=151552
Score = 114 bits (126), Expect = 2e-22
Identities = 210/304 (69%), Gaps = 9/304 (3%)
Strand=Plus/Minus
Query 1684 TTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAAT 1743
||||||||| | | ||||| ||||||||||| | || | || ||||| ||||||||
Sbjct 85439 TTTATAGGATAATCA-GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381
Query 1744 TTGAGTGGGCTTACCGTA-TTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACT 1802
|||| ||| || |||| |||| | || || ||||| ||| || || | ||||
Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTT-CCAGTTGCGCTGTGCGCCTACGAACT 85322
Query 1803 CTTTAAAATGCTT------TAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAG 1856
|| | ||| ||| || ||||| | || ||||| || |||||||||||||| |
Sbjct 85321 ATTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATG 85262
Query 1857 CATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCCACACATGTAATTATGGACTC 1916
|||||||||| | | || | ||| ||||| ||| ||||| || || |
Sbjct 85261 CATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGC 85202
Query 1917 CTAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGCTCCTTCAACAACGATGCTCA 1976
||||| | || |||||| | |||||| |||||| || ||||||| || |||||||
Sbjct 85201 CTAATAAACGAGCCCATGTTATTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCA 85142
Query 1977 TCGG 1980
| ||
Sbjct 85141 TGGG 85138
>seq54129
Length=2260
Score = 113 bits (124), Expect = 8e-22
Identities = 197/287 (69%), Gaps = 6/287 (2%)
Strand=Plus/Minus
Query 1700 GGTCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAATTTGAGTGGGCTTACCG 1759
||||| ||||||||||| | ||| | || ||||| |||||||||||| | || || |||
Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201
Query 1760 TATTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAATGCT----- 1814
|| || ||| || |||| ||| || || | |||| || ||||||
Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141
Query 1815 -TTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTTGAAAATATC 1873
||| ||||| |||| || || || |||||||||||||| |||||||||| || |
Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081
Query 1874 TTAGGGCTAAGATCCAGGTGTCCACACATGTAATTATGGACTCCTAATGACCGTGCCCAT 1933
|| | ||| || || ||| ||||| || || | |||||| || ||||||
Sbjct 2080 TTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCAT 2021
Query 1934 AACGTCTTCCCTGTTCTTGTTGCTCCTTCAACAACGATGCTCATCGG 1980
|| || ||| |||||| || ||||||| || |||||||| ||
Sbjct 2020 GCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1974
>seq22495
Length=567
Score = 98.7 bits (108), Expect = 2e-17
Identities = 135/189 (71%), Gaps = 6/189 (3%)
Strand=Plus/Minus
Query 1684 TTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAAT 1743
||||||||| || ||||| ||||||||||| | ||| | | ||||| | ||||||
Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327
Query 1744 TTGAGTGGGCTTACCGTATTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTC 1803
|||| || || ||||| || ||| ||||||| ||| || || | ||||
Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267
Query 1804 TTTAAAATGCTT------TAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGC 1857
|| | ||||||| || ||||| |||| | |||||| |||||||||||||| ||
Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207
Query 1858 ATCATTTGA 1866
|||||||||
Sbjct 206 ATCATTTGA 198
>seq490
Length=137872
Score = 87.8 bits (96), Expect = 3e-14
Identities = 130/176 (74%), Gaps = 10/176 (6%)
Strand=Plus/Minus
Query 1708 ATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAATTTGAGTGGGCTTACCGTATTT-GA 1766
|||||| || | || | ||||| |||||||||||||| | |||||| | ||||| ||
Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559
Query 1767 TGTTGCTTTGCCAGTCCAT-CTGGGCCCCCATAAACTCTTTAAAATGCTTT----AGATA 1821
|||| ||||| | || || |||||| |||| ||| | ||||||| ||| |
Sbjct 70558 ATCAGCTT-GCCAG-CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGA 70501
Query 1822 -ATGC-GGATCAACGTCATCAATGACGTTATACCAAGCATCATTTGAAAATATCTT 1875
|||| ||| |||||||| |||||||||||||| | ||||| |||||| ||||
Sbjct 70500 GATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTT 70445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8718100348230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |