Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005338.2 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq3439 136 7e-29 seq3283 136 7e-29 seq953 114 2e-22 seq815 114 2e-22 seq54129 113 8e-22 seq22495 98.7 2e-17 seq490 87.8 3e-14 >seq3439 Length=62978 Score = 136 bits (150), Expect = 7e-29 Identities = 219/315 (70%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 1672 ATCAAGGAACTCTTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTAT 1731 ||| | |||| ||||||||| | ||||| |||||||||| | ||| | || || Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1732 CCCACCTTTAATTTGAGTGGGCTTACCGTATTTGATGTTGCTTTGCCAGTCCATCTGGGC 1791 ||| |||||||||||| || || ||||| || |||| ||||| | ||| || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1792 CCCCATAAACTCTTTAAAATGCTT------TAGATAATGCGGATCAACGTCATCAATGAC 1845 || | |||| || | ||||||| || ||||| |||| || ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1846 GTTATACCAAGCATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCCACACATGTA 1905 ||||||||| ||||||||||| | | || | ||| ||||| ||| ||||| Sbjct 811 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 752 Query 1906 ATTATGGACTCCTAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGCTCCTTCAAC 1965 || || |||||||| || |||||| || |||||| |||||| || ||||||| Sbjct 751 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAAT 692 Query 1966 AACGATGCTCATCGG 1980 || |||||||| || Sbjct 691 AATAATGCTCATGGG 677 >seq3283 Length=49157 Score = 136 bits (150), Expect = 7e-29 Identities = 219/315 (70%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 1672 ATCAAGGAACTCTTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTAT 1731 ||| | |||| ||||||||| | ||||| ||||||||||| | ||| | || || Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1732 CCCACCTTTAATTTGAGTGGGCTTACCGTATTTGATGTTGCTTTGCCAGTCCATCTGGGC 1791 ||| |||||||||||| || || ||||| || ||| ||||| | ||| || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1792 CCCCATAAACTCTTTAAAATGCTT------TAGATAATGCGGATCAACGTCATCAATGAC 1845 || | |||| || | ||||||| || ||||| |||| ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1846 GTTATACCAAGCATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCCACACATGTA 1905 ||||||||| ||||||||||| | | || | ||| ||||| ||| ||||| Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072 Query 1906 ATTATGGACTCCTAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGCTCCTTCAAC 1965 || || |||||||| || |||||| || |||||| |||||| || ||||||| Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAAT 2012 Query 1966 AACGATGCTCATCGG 1980 || |||||||| || Sbjct 2011 AATAATGCTCATGGG 1997 >seq953 Length=224861 Score = 114 bits (126), Expect = 2e-22 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1684 TTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAAT 1743 ||||||||| || ||||| |||||||||| | ||| | || ||||| |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1744 TTGAGTGGGCTTACCGTATTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTC 1803 |||| | | || ||||| || ||| ||||| | ||| | || | |||| Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1804 TTTAAAATGCT------TTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGC 1857 || | ||| || ||| ||||| |||| ||||| || || ||||||||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1858 ATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCCACACATGTAATTATGGACTCC 1917 ||||||||| | | || | ||| ||||| || ||||| || || || Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCC 2063 Query 1918 TAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGCTCCTTCAACAACGATGCTCAT 1977 |||||| || |||||| || |||||| |||||| || ||||||| || |||||||| Sbjct 2064 TAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGTGCCTTCAATAATAATGCTCAT 2123 Query 1978 CGG 1980 || Sbjct 2124 GGG 2126 >seq815 Length=151552 Score = 114 bits (126), Expect = 2e-22 Identities = 210/304 (69%), Gaps = 9/304 (3%) Strand=Plus/Minus Query 1684 TTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAAT 1743 ||||||||| | | ||||| ||||||||||| | || | || ||||| |||||||| Sbjct 85439 TTTATAGGATAATCA-GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1744 TTGAGTGGGCTTACCGTA-TTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACT 1802 |||| ||| || |||| |||| | || || ||||| ||| || || | |||| Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTT-CCAGTTGCGCTGTGCGCCTACGAACT 85322 Query 1803 CTTTAAAATGCTT------TAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAG 1856 || | ||| ||| || ||||| | || ||||| || |||||||||||||| | Sbjct 85321 ATTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATG 85262 Query 1857 CATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCCACACATGTAATTATGGACTC 1916 |||||||||| | | || | ||| ||||| ||| ||||| || || | Sbjct 85261 CATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGC 85202 Query 1917 CTAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGCTCCTTCAACAACGATGCTCA 1976 ||||| | || |||||| | |||||| |||||| || ||||||| || ||||||| Sbjct 85201 CTAATAAACGAGCCCATGTTATTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCA 85142 Query 1977 TCGG 1980 | || Sbjct 85141 TGGG 85138 >seq54129 Length=2260 Score = 113 bits (124), Expect = 8e-22 Identities = 197/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 1700 GGTCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAATTTGAGTGGGCTTACCG 1759 ||||| ||||||||||| | ||| | || ||||| |||||||||||| | || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1760 TATTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAATGCT----- 1814 || || ||| || |||| ||| || || | |||| || |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1815 -TTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTTGAAAATATC 1873 ||| ||||| |||| || || || |||||||||||||| |||||||||| || | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1874 TTAGGGCTAAGATCCAGGTGTCCACACATGTAATTATGGACTCCTAATGACCGTGCCCAT 1933 || | ||| || || ||| ||||| || || | |||||| || |||||| Sbjct 2080 TTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCAT 2021 Query 1934 AACGTCTTCCCTGTTCTTGTTGCTCCTTCAACAACGATGCTCATCGG 1980 || || ||| |||||| || ||||||| || |||||||| || Sbjct 2020 GCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1974 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 1684 TTTATAGGACGAACGTGGTCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAAT 1743 ||||||||| || ||||| ||||||||||| | ||| | | ||||| | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1744 TTGAGTGGGCTTACCGTATTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTC 1803 |||| || || ||||| || ||| ||||||| ||| || || | |||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1804 TTTAAAATGCTT------TAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGC 1857 || | ||||||| || ||||| |||| | |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1858 ATCATTTGA 1866 ||||||||| Sbjct 206 ATCATTTGA 198 >seq490 Length=137872 Score = 87.8 bits (96), Expect = 3e-14 Identities = 130/176 (74%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 1708 ATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAATTTGAGTGGGCTTACCGTATTT-GA 1766 |||||| || | || | ||||| |||||||||||||| | |||||| | ||||| || Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1767 TGTTGCTTTGCCAGTCCAT-CTGGGCCCCCATAAACTCTTTAAAATGCTTT----AGATA 1821 |||| ||||| | || || |||||| |||| ||| | ||||||| ||| | Sbjct 70558 ATCAGCTT-GCCAG-CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGA 70501 Query 1822 -ATGC-GGATCAACGTCATCAATGACGTTATACCAAGCATCATTTGAAAATATCTT 1875 |||| ||| |||||||| |||||||||||||| | ||||| |||||| |||| Sbjct 70500 GATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTT 70445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718100348230