Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005347.1 Length=2786 Score E Sequences producing significant alignments: (Bits) Value seq3283 127 4e-26 seq3439 125 1e-25 seq22495 116 7e-23 seq54129 104 4e-19 seq953 104 4e-19 seq490 100 5e-18 seq33 100 5e-18 seq20728 95.1 2e-16 seq77518 84.2 4e-13 seq815 82.4 1e-12 seq5493 77.0 6e-11 >seq3283 Length=49157 Score = 127 bits (140), Expect = 4e-26 Identities = 183/254 (72%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 1693 GGGCCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1752 || || |||||||| || | |||| ||||| |||||||||||||||| ||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1753 TACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCT----- 1807 ||||||| ||| ||||| | | ||| || || | ||| | || | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1808 -TTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAACC 1866 ||| ||| | ||| |||||| || |||||||||||||| |||||||| || | | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGT-ACGT 2105 Query 1867 TTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1923 |||||| || || || ||||| || || ||| || ||||| |||||||| | |||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1924 CAAACAGTTTTGCC 1937 || | ||||| || Sbjct 2046 CATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 125 bits (138), Expect = 1e-25 Identities = 199/281 (71%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 1666 TCTAGGAATTCTTTATATGAGGATGTTGGGCCTGGATTGCAGAGGAAGATAGAGGGAATT 1725 |||| ||| |||||| || || || || ||||||| || | |||| ||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1726 CCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCC 1785 |||||||||||||||| ||| || |||||||||| |||| ||||| | | ||| || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1786 CCAAAGAATTCTTTCCAGTGCT------TTAGATAGTGCGGGTCGACGTCATCAATGACG 1839 || | ||| | || | |||| ||| ||| | ||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1840 TTATACCAAGCATCATTAGAATAAACCTTTGGACTT-AAGTC--TAAATGACCACATAAG 1896 |||||||| |||||||| || | | |||||| || || || ||||| || || | Sbjct 810 TTATACCATGCATCATTTGAGT-ACGTTTTGGAATTAAAATCCATAAAT--CCCATTATG 754 Query 1897 TAATTATGTGGCCCTAATGACCTAGCCCAAACAGTTTTGCC 1937 || || ||||| |||||||| | |||||| | ||||| || Sbjct 753 TAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq22495 Length=567 Score = 116 bits (128), Expect = 7e-23 Identities = 182/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1666 TCTAGGAATTCTTTATATGAGGATGTTGGGCCTGGATTGCAGAGGAAGATAGAGGGAATT 1725 |||| |||| |||||| || | || || |||||||| || | |||| |||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1726 CCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCC 1785 |||| ||||||||||| ||| || |||||||||| ||| ||||||| | ||| || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1786 CCAAAGAATTCTTTCCAGTGCT------TTAGATAGTGCGGGTCGACGTCATCAATGACG 1839 || | ||| | || || |||| ||| ||| | ||| || |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1840 TTATACCAAGCATCATTAGAATAAACCTTTGGACTT-AAGTCTAAATGACCACATAAGTA 1898 |||||||| |||||||| || | | |||||| || || || ||| || || ||| Sbjct 217 TTATACCATGCATCATTTGAGT-ACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTA 159 Query 1899 ATTATGTGGCCCTAATGA 1916 || ||||| |||||||| Sbjct 158 GTTGTGTGGGCCTAATGA 141 >seq54129 Length=2260 Score = 104 bits (114), Expect = 4e-19 Identities = 178/254 (70%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 1693 GGGCCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1752 || || |||||||| || | |||| ||||| |||||||||||||||||||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1753 TACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCT----- 1807 ||||||| ||| || |||| ||| || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1808 -TTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAACC 1866 ||| ||| | ||| ||| || || |||||||||||||| ||||||| || | | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGT-ATGT 2082 Query 1867 TTTGGACTT--AAGTC-TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1923 |||||| || || || ||||| || || ||| || ||| | | |||||| | |||| Sbjct 2081 TTTGGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCC 2024 Query 1924 CAAACAGTTTTGCC 1937 || | ||||| || Sbjct 2023 CATGCTGTTTTTCC 2010 >seq953 Length=224861 Score = 104 bits (114), Expect = 4e-19 Identities = 193/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 1666 TCTAGGAATTCTTTATATGAGGATGTTGGGCCTGGATTGCAGAGGAAGATAGAGGGAATT 1725 |||| |||| |||||| || | || || |||||||| | | |||| ||||| Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1726 CCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCC 1785 ||||||||||||||||||| || |||||||||| ||| ||||| | | ||| | Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACG 1932 Query 1786 CCAAAGAATTCTTTCCAGTGCT------TTAGATAGTGCGGGTCGACGTCATCAATGACG 1839 || | ||| | || | | || ||| ||| | ||| |||||| || || ||| Sbjct 1933 CCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACG 1992 Query 1840 TTATACCAAGCATCATTAGAATAAACCTTTGGACTTAAGTC--TAAATGACCACA-TAAG 1896 |||||||| |||||||| || || || | | | || || ||||| | || || | Sbjct 1993 TTATACCATGCATCATTTGAGTACGTTTTCGAATTAAAATCCATAAAT---CTCATTATG 2049 Query 1897 TAATTATGTGGCCCTAATGACCTAGCCCAAACAGTTTTGCC 1937 || || ||||| |||||||| | |||||| | ||||| || Sbjct 2050 TAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2090 >seq490 Length=137872 Score = 100 bits (110), Expect = 5e-18 Identities = 172/244 (70%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 1701 ATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGT 1760 |||||| |||| || || || ||||| ||||||||||| |||||||| | || |||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1761 GTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCTT----TAGATAG- 1815 | ||||||| || |||||||| | || |||| ||||| ||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1816 TGC-GGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAACCTTTGGACT 1874 ||| || ||||||||| |||||||||||||| | ||||| ||| | |||| | | Sbjct 70498 TGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTATT 70439 Query 1875 TAAGTCTA-AATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAACAGTTT 1933 || || | || | ||| | |||||||||||||| || || |||||||| |||| | Sbjct 70438 GAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAGTCT 70380 Query 1934 TGCC 1937 | || Sbjct 70379 TCCC 70376 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 171/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 1696 CCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1755 || |||||||| || | |||| | ||||| |||| ||||||||||| ||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1756 TTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCT------TT 1809 |||| || ||||||| | ||| | || | ||| | || | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1810 AGATAGTGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAACCTTT 1869 | ||| || |||||||||||||||||||||||| || || || || || | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1870 GGACTTAAGTCTA-AATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAAC 1928 | | | || || | || | ||| || |||||||||||| || || || | |||||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1929 AGTTTT 1934 ||||| Sbjct 403063 TGTTTT 403058 >seq20728 Length=3653 Score = 95.1 bits (104), Expect = 2e-16 Identities = 158/225 (70%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 1720 GGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTC 1779 ||||| || ||||||||||||| ||| || |||||||||| ||| |||| || | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1780 TGGGCCCCAAAGAATTCTTTCCAGTGCT------TTAGATAGTGCGGGTCGACGTCATCA 1833 || || || | ||| | || | |||| ||| ||| | ||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1834 ATGACGTTATACCAAGCATCATTAGAATAAACCTTTGGACTTAAGTCTAAATGACCACA- 1892 ||||||||||| || |||||||| || || || | | | || |||| | | | || Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATA-AATCTCAT 1619 Query 1893 TAAGTAATTATGTGGCCCTAATGACCTAGCCCAAACAGTTTTGCC 1937 || ||| || ||||| ||||||| | |||||| | ||||| || Sbjct 1620 TATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCC 1664 >seq77518 Length=14724 Score = 84.2 bits (92), Expect = 4e-13 Identities = 170/250 (68%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 1696 CCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1755 || |||||||| || | |||| | ||||| |||||||||||||||| || || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1756 TTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCT------TT 1809 |||| || || |||| | || || || | ||| | || | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1810 AGATAGTGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAACCTTT 1869 | ||| || ||| |||||||||||||||||||| || || || || || || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1870 GGACTTAAGTCTA-AATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAAC 1928 | | || || | || | ||| || ||||||||||| || || | | |||||||| Sbjct 2220 AAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCAAAC 2162 Query 1929 AGTTTTGCCG 1938 ||||| ||| Sbjct 2161 TGTTTTACCG 2152 >seq815 Length=151552 Score = 82.4 bits (90), Expect = 1e-12 Identities = 166/242 (69%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 1693 GGGCCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1752 || || |||||||| || | ||| ||||| ||||||||||||||| || || || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1753 TACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCT----- 1807 ||||||| ||| | ||||| | ||| || || | ||| | || | | || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1808 -TTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAACC 1866 ||| ||| | | | |||||| || |||||||||||||| |||||||| || | | Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGT-ACGT 85246 Query 1867 TTTGGACTT-AAGTC--TAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCC 1923 |||||| || || || ||||| || || ||| || |||| |||||| | | |||| Sbjct 85245 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCC 85188 Query 1924 CA 1925 || Sbjct 85187 CA 85186 >seq5493 Length=32325 Score = 77.0 bits (84), Expect = 6e-11 Identities = 140/202 (69%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 1665 TTCTAGGAATTCTTTATATGAGGATGTT---GGGCCTGGATTGCAGAGGAAGATAGAGGG 1721 ||| || ||| ||||||| || || | | || ||||||||| | | ||| | | Sbjct 31596 TTCAAGAAATGCTTTATAGGAATATTCTCCGGTGCATGGATTGCACATCACAATACATGT 31537 Query 1722 AATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTG 1781 ||||| | ||||||||||| ||| || |||||||| || |||||||| || Sbjct 31536 GATTCCACTTTTAATTTGAACTGGTTTACCGTACTTCACATTTGATTGCCAGTTGTATTG 31477 Query 1782 GGCCCCAAAGAATTCTTTCCAG-TGCTTT--AGATAGTGCGGGTCGACGTCATCAATGAC 1838 | || || | ||||||||| | |||| ||||| ||| ||||||||||||| Sbjct 31476 AGACCTAAGTAGCTCTTTCCAGCTTCTTTGCAGATATGTCGGTGATACGTCATCAATGAT 31417 Query 1839 GTTATACCAAGCATCATTAGAA 1860 ||| ||||| ||| ||||||| Sbjct 31416 GTTGTACCATGCACGATTAGAA 31395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8794581048225