Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005348.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq3439 127 4e-26 seq77518 122 2e-24 seq5745 120 5e-24 seq3283 113 8e-22 seq1993 111 3e-21 seq33 107 3e-20 seq22495 104 4e-19 seq54129 93.3 7e-16 seq20728 89.7 9e-15 seq815 89.7 9e-15 seq442 87.8 3e-14 seq953 86.0 1e-13 seq80468 84.2 4e-13 seq35612 82.4 1e-12 seq490 77.0 6e-11 >seq3439 Length=62978 Score = 127 bits (140), Expect = 4e-26 Identities = 180/247 (73%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 1699 GATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTTG 1758 ||||||| || | ||||| ||||| || ||||||||||||||||| |||||||| |||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1759 TGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCT------TTAAAT 1812 |||| ||||| | || || || || | | || || | |||||| |||||| Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1813 AATGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTACACCTTTGGGC 1872 ||| || ||||||||| ||||||||||||||||| | ||| |||||| ||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTAC-GTTTTGGAA 778 Query 1873 TT-AAGTC--TAGGTGCCCACATAAATAATTATGTGGACCCAGAGAACGGGCCCATACAG 1929 || || || || | |||| || || || ||||| || | ||||| |||||| | | Sbjct 777 TTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTG 720 Query 1930 TTTTGCC 1936 |||| || Sbjct 719 TTTTCCC 713 >seq77518 Length=14724 Score = 122 bits (134), Expect = 2e-24 Identities = 195/277 (70%), Gaps = 11/277 (4%) Strand=Plus/Minus Query 1671 AATTCCTTATATGATGAAGTTG---CCCCTGGATTGCAGAGGAAAATACTGGGAATGCCC 1727 ||| | ||||| ||| || || |||| |||||||| || | |||| ||||| || Sbjct 2427 AATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCG 2368 Query 1728 CCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCC 1787 |||||||||||||||| ||| |||| |||| || || |||| | ||| || || Sbjct 2367 CCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCT 2308 Query 1788 ATCAGCTCTTTAAAATGCT------TTAAATAATGTGGGTCGACATCATCAATGACGTTA 1841 | | || || | |||||| |||||||| ||| ||||||||||||||||||| Sbjct 2307 ACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTA 2248 Query 1842 TACCATGCGTTATTGGAGTACACCTTTGGGCTTAAGTCTA-GGTGCCCACATAAATAATT 1900 ||||| |||| || ||||| || | || || | ||||| || |||||| Sbjct 2247 TACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCA-TTATATAATT 2189 Query 1901 ATGTGGACCCAGAGAACGGGCCCATACAGTTTTGCCG 1937 ||||||||||| |||| ||||| || ||||| ||| Sbjct 2188 ATGTGGACCCAACTAACGTGCCCAAACTGTTTTACCG 2152 >seq5745 Length=45059 Score = 120 bits (132), Expect = 5e-24 Identities = 191/271 (70%), Gaps = 11/271 (4%) Strand=Plus/Plus Query 1677 TTATATGATGAAGTTG---CCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTA 1733 ||||| ||| || || |||| |||||||| | | |||| ||||| || |||||| Sbjct 43520 TTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTA 43579 Query 1734 ATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGC 1793 ||||||||||| || ||||| |||| || ||||| | | ||| || || || | | Sbjct 43580 ATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAAC 43639 Query 1794 TCTTTAAAATGCT------TTAAATAATGTGGGTCGACATCATCAATGACGTTATACCAT 1847 | || | |||| | |||||||| ||| || ||||||||||||||||||||| Sbjct 43640 TGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCAT 43699 Query 1848 GCGTTATTGGAGTACACCTTTGGGCTTAAGTCTA-GGTGCCCACATAAATAATTATGTGG 1906 |||| || || || || | | || || | ||||| || |||||||||||| Sbjct 43700 GCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGG 43758 Query 1907 ACCCAGAGAACGGGCCCATACAGTTTTGCCG 1937 ||||| ||||| ||||| || ||||| ||| Sbjct 43759 ACCCAACGAACGTGCCCAAACTGTTTTACCG 43789 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 179/251 (71%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 1695 CCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTAT 1754 || |||||||| || | ||||| ||||| || ||||||||||||||||| || ||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1755 TTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCT------TT 1808 |||| ||| ||||| | || || || || | | || || | |||||| || Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1809 AAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTACACCTTT 1868 ||||||| || ||| || || ||||||||||||||||| | ||| |||||| ||| Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC-GTTTT 2102 Query 1869 GGGCTT-AAGTC--TAGGTGCCCACATAAATAATTATGTGGACCCAGAGAACGGGCCCAT 1925 || || || || || | |||| || || || ||||| || | ||||| |||||| Sbjct 2101 GGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1926 ACAGTTTTGCC 1936 | ||||| || Sbjct 2043 GCTGTTTTCCC 2033 >seq1993 Length=81530 Score = 111 bits (122), Expect = 3e-21 Identities = 177/252 (70%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 1693 CCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGT 1752 |||| |||||||| || | |||| ||||| || |||||||||||||||| || |||| Sbjct 74405 CCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGT 74346 Query 1753 ATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCT------ 1806 | |||| || ||||| | | ||| || | | | || || | |||| | Sbjct 74345 ACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAA 74286 Query 1807 TTAAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTACACCT 1866 |||||||| ||| ||| |||||||||||||||||||| ||||| || || || | Sbjct 74285 TTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTT 74226 Query 1867 TTGGGCTTAAGTCTA-GGTGCCCACATAAATAATTATGTGGACCCAGAGAACGGGCCCAT 1925 | | | || || | ||||| || ||||||||||||||||| ||||| | ||| Sbjct 74225 TCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGTCCAA 74167 Query 1926 ACAGTTTTGCCG 1937 || ||||| ||| Sbjct 74166 ACTGTTTTACCG 74155 >seq33 Length=454124 Score = 107 bits (118), Expect = 3e-20 Identities = 174/248 (70%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 1693 CCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGT 1752 |||| |||||||| || | |||| ||||| || | ||||||||||||||| ||||||| Sbjct 403304 CCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGT 403245 Query 1753 ATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCT------ 1806 | |||| || ||||||| | || | || | | || || | |||| | Sbjct 403244 ACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAA 403185 Query 1807 TTAAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTACACCT 1866 |||||||| ||| ||| |||||||||||||||||||| |||| || ||||| Sbjct 403184 TTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTC 403125 Query 1867 TTGGGCTTAAGTCTA-GGTGCCCACATAAATAATTATGTGGACCCAGAGAACGGGCCCAT 1925 | | | || || | ||||| || |||||||||||||||| ||||| ||||| Sbjct 403124 TCGAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCAA 403066 Query 1926 ACAGTTTT 1933 || ||||| Sbjct 403065 ACTGTTTT 403058 >seq22495 Length=567 Score = 104 bits (114), Expect = 4e-19 Identities = 138/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 1677 TTATATGATGAAGTTGCCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATT 1736 ||||| ||| || | || |||||||| || | ||||| |||| || | ||||||| Sbjct 385 TTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATT 326 Query 1737 TGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCT 1796 |||||||| |||||||| |||| ||| ||||||| | || || || | | || | Sbjct 325 TGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGT 266 Query 1797 TTAAAATGCT------TTAAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCG 1850 | | |||||| ||||||||| || || ||||| ||||||||||||||||| Sbjct 265 TGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 Query 1851 TTATTGGAGTAC 1862 | ||| |||||| Sbjct 205 TCATTTGAGTAC 194 >seq54129 Length=2260 Score = 93.3 bits (102), Expect = 7e-16 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 1695 CCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTAT 1754 || |||||||| || | ||||| ||||| || ||||||||||||| ||| |||||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1755 TTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCT------TT 1808 |||| ||| || |||| || || || | | || || |||||| || Sbjct 2197 TTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAATT 2138 Query 1809 AAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTA 1861 ||||||| || |||||| || ||||||||||||||| | | ||| ||||| Sbjct 2137 AAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq20728 Length=3653 Score = 89.7 bits (98), Expect = 9e-15 Identities = 112/153 (73%), Gaps = 7/153 (5%) Strand=Plus/Plus Query 1716 CTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCT 1775 || ||||| |||||||||||||||| ||| |||||||| |||| ||| |||| || Sbjct 1439 CTTGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTG 1497 Query 1776 CTTTGGGCCCCCATCAGCTCTTTAAAATGCT------TTAAATAATGTGGGTCGACATCA 1829 | || || || | | || || | |||||| ||||||||| || ||| ||| Sbjct 1498 CGCTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCA 1557 Query 1830 TCAATGACGTTATACCATGCGTTATTGGAGTAC 1862 || ||||||||||| ||||| | ||| |||||| Sbjct 1558 TCGATGACGTTATATCATGCATCATTTGAGTAC 1590 >seq815 Length=151552 Score = 89.7 bits (98), Expect = 9e-15 Identities = 124/174 (71%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 1695 CCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTAT 1754 || |||||||| || | |||||| ||||| || |||||||||||| | || ||| |||| Sbjct 85421 CCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTAC 85362 Query 1755 TTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCT------TT 1808 |||| ||| | ||||| | || || || | | || || | ||| || || Sbjct 85361 TTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAATT 85302 Query 1809 AAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTAC 1862 ||||||| | ||| || || ||||||||||||||||| | ||| |||||| Sbjct 85301 AAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC 85248 >seq442 Length=237535 Score = 87.8 bits (96), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 1677 TTATATGATGAAGTTGCCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATT 1736 ||||| ||| || | | || |||||||| || ||||| ||||| | ||||||||| Sbjct 22763 TTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATT 22822 Query 1737 TGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCT 1796 ||||||| |||||||| |||| ||| ||| ||| || ||| || || | | || | Sbjct 22823 TGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGT 22882 Query 1797 TTAAAATGCT------TTAAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCG 1850 | | |||||| ||||||||| | ||| || || || |||||||||| ||| Sbjct 22883 TAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGCA 22940 Query 1851 TTATTGGAGTAC 1862 | ||| |||||| Sbjct 22941 TCATTTGAGTAC 22952 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 1677 TTATATGATGAAGTTGCCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATT 1736 ||||| ||| || | || |||||||| | | ||||| ||||| || ||||||||| Sbjct 1825 TTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATT 1884 Query 1737 TGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCT 1796 |||| || |||||||| |||| ||| ||||| | || || | || | | || | Sbjct 1885 TGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGT 1944 Query 1797 TTAAAATGCT------TTAAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCG 1850 | | ||| || ||||||||| || ||| || || || |||||||||||||| Sbjct 1945 TGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCA 2004 Query 1851 TTATTGGAGTAC 1862 | ||| |||||| Sbjct 2005 TCATTTGAGTAC 2016 >seq80468 Length=4946 Score = 84.2 bits (92), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 1699 GATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTTG 1758 ||||||| || | ||||| ||||| || |||||||| ||||| || |||||||| |||| Sbjct 4273 GATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTG 4332 Query 1759 TGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCTT------TAAAT 1812 | ||| | ||| | | | | || || | | || || | ||||||| ||||| Sbjct 4333 TATTGGCCTACCATTGTGCT-GTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 4391 Query 1813 AATGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTAC 1862 ||| || ||| || | ||||||||||||||||| | ||| |||||| Sbjct 4392 AATTTGAAGGGACGTCGTTGATGACGTTATACCATGCATAATT-GAGTAC 4440 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1677 TTATATGATGAAGTTGCCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATT 1736 ||||| ||| || | || |||||||| || | ||||| |||||||| ||||||||| Sbjct 1492 TTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATT 1551 Query 1737 TGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCA 1771 |||||||| |||||||| |||| |||| ||||| Sbjct 1552 TGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq490 Length=137872 Score = 77.0 bits (84), Expect = 6e-11 Identities = 169/245 (69%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 1700 ATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTTGT 1759 |||||| |||| ||| || || || ||||||||||| | |||||| | ||||||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1760 GTTGCTTTGCCAGTCTCT-TTGGGCCCCCATCAGCTCTTTAAAATGCT--TTAAATA--- 1813 | ||||||| || | | |||||| || ||||| | |||||| || | | Sbjct 70558 ATCAGCTTGCCAG-CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAG 70500 Query 1814 ATG-TGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTACACCTTTGGGC 1872 ||| ||| ||| ||||| |||||||||||||||| | |||||| | |||| Sbjct 70499 ATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTAT 70440 Query 1873 TTAAGTCTA-GGTGCCCACATAAATAATTATGTGGACCCAGAGAACGGGCCCATACAGTT 1931 | || || | ||||| | || |||||||||||||||| | | |||||| |||| Sbjct 70439 TGAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAGTC 70381 Query 1932 TTGCC 1936 || || Sbjct 70380 TTCCC 70376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8753021777550