Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005635.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq5745 116 6e-23 seq33 104 4e-19 seq77518 96.9 6e-17 seq3283 84.2 4e-13 seq1993 84.2 4e-13 seq3439 80.6 5e-12 seq490 80.6 5e-12 seq22495 78.8 2e-11 seq54129 77.0 6e-11 >seq5745 Length=45059 Score = 116 bits (128), Expect = 6e-23 Identities = 197/283 (70%), Gaps = 13/283 (5%) Strand=Plus/Plus Query 1665 TCCAAGTACTCTTTATAAGAGGATTTGGGACCT---GGGTTACAGAGAAAGATGGTGGGG 1721 || ||| || |||||||||| | | ||||| || || || | | ||| || Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1722 ATTCCACCTTTAATGTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTTGC 1781 || ||||||||||| || || || ||||| ||| ||||||||||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1782 GCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATG 1835 || || ||||| | || ||||||| |||||| |||| | |||||| ||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1836 ACGTTATACCATGCCTCGTTAGAGAAAATCTTATCG--TTCAGATCCAAATGGCCGCAAA 1893 |||||||||||||| ||||| || || || ||| |||| ||||| | ||| | Sbjct 43688 ACGTTATACCATGCGTCGTT--CGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTA 43745 Query 1894 GATAATTATGAGGACCCAATGCTCTTGCCCACATGGTTTTACC 1936 ||||||||| |||||||| | | |||||| | |||||||| Sbjct 43746 TATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 192/279 (69%), Gaps = 12/279 (4%) Strand=Plus/Minus Query 1665 TCCAAGTACTCTTTATAAGAGGATTTGGGACCT--GGGTTACAGAGAAAGATGGTGGGGA 1722 || ||| || |||||||||| | | ||||| || || || || | ||| || | Sbjct 403334 TCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAA 403275 Query 1723 TTCCACCTTTAATGTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTTGCG 1782 | || | |||||| || || |||||||| ||| ||||||||||||||| | || Sbjct 403274 TCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTA 403215 Query 1783 CGCCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGA 1836 |||| | ||| | || |||| || |||||| |||| |||||||| |||| Sbjct 403214 CGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGA 403155 Query 1837 CGTTATACCATGCCTCGTTAGAGAAAATCTTATCG--TTCAGATCCAAATGGCCGCAAAG 1894 |||||||||| || ||||| ||| || || ||| |||| ||||| | ||| | Sbjct 403154 CGTTATACCACGCGTCGTTCGAG--TATGTTCTCGAATTCAAATCCATAAAGCCCATTAT 403097 Query 1895 ATAATTATGAGGACCCAATGCTCTTGCCCACATGGTTTT 1933 |||||||| |||||||| | | |||||| | ||||| Sbjct 403096 GTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 190/281 (68%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 1665 TCCAAGTACTCTTTATAAGAGGATTTGGGACCT---GGGTTACAGAGAAAGATGGTGGGG 1721 |||||| | |||||||||| | | ||||| || || || || | ||| || Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1722 ATTCCACCTTTAATGTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTTGC 1781 || || |||||||| || | ||| |||| ||| |||||||||| |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1782 GCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATG 1835 || || | ||| | || |||| || |||||| |||| || ||||| ||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1836 ACGTTATACCATGCCTCGTTAGAGAAAATCTTATCGTTCAGATCCAAATGGCCGCAAAGA 1895 ||||||||||| || ||||| ||| | | || |||| ||||| | ||| | | Sbjct 2253 ACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATA 2194 Query 1896 TAATTATGAGGACCCAATGCTCTTGCCCACATGGTTTTACC 1936 |||||||| |||||||| | |||||| | |||||||| Sbjct 2193 TAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq3283 Length=49157 Score = 84.2 bits (92), Expect = 4e-13 Identities = 139/201 (69%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 1665 TCCAAGTACTCTTTATAAGAGGATTTGGGACCTGGGTTACAGAGAAAGATGGTGGGGATT 1724 |||||| || |||||| || | || || || || || || | ||| | || || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1725 CCACCTTTAATGTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTTGCGCG 1784 || |||||||| || || || ||||| ||| |||| | |||||| | || || ||| Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1785 CCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGACG 1838 || | ||| | || |||| ||| ||||||| ||| ||||| ||||||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1839 TTATACCATGCCTCGTTAGAG 1859 ||||||||||| || || ||| Sbjct 2130 TTATACCATGCATCATTTGAG 2110 >seq1993 Length=81530 Score = 84.2 bits (92), Expect = 4e-13 Identities = 149/216 (69%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 1729 CTTTAATGTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTTGCGCGCCCA 1788 ||||||| || || || ||||| ||| ||||||||||||| | | ||| || | | Sbjct 74369 CTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATA 74310 Query 1789 TGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGACGTTAT 1842 ||| | || |||| || |||||| |||| |||||||| |||||||||| Sbjct 74309 CGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTAT 74250 Query 1843 ACCATGCCTCGTTAGAGAAAATCTTATCG--TTCAGATCCAAATGGCCGCAAAGATAATT 1900 |||| || | ||| || || || ||| |||| ||||| | ||| | |||||| Sbjct 74249 ACCACGCGTTGTT--CGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATT 74192 Query 1901 ATGAGGACCCAATGCTCTTGCCCACATGGTTTTACC 1936 ||| |||||||| | | || ||| | |||||||| Sbjct 74191 ATGTGGACCCAACGAACGTGTCCAAACTGTTTTACC 74156 >seq3439 Length=62978 Score = 80.6 bits (88), Expect = 5e-12 Identities = 138/201 (69%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 1665 TCCAAGTACTCTTTATAAGAGGATTTGGGACCTGGGTTACAGAGAAAGATGGTGGGGATT 1724 || ||| || |||||| || ||| || || | || || || | ||| | || || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1725 CCACCTTTAATGTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTTGCGCG 1784 || |||||||| || || |||||||| ||| | || | ||||| | || || ||| Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1785 CCCATGAATTCTTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGACG 1838 || | ||| | || |||| ||| ||||||| ||| || |||||||||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1839 TTATACCATGCCTCGTTAGAG 1859 ||||||||||| || || ||| Sbjct 810 TTATACCATGCATCATTTGAG 790 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 5e-12 Identities = 151/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 1719 GGGATTCCACCTTTAATGTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAG-TCTCT 1777 || |||||||||||||| ||| | ||||| | |||||| || | |||||| | | Sbjct 70599 GGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGAATCAGCTTGCCAGCTATGC 70540 Query 1778 TTGCGCGCCCATGAATTCTTTGAAATGTTTC----AAATA-ATG-TGGATCAACGTCATC 1831 ||| || || || | || | |||| ||| | | | ||| |||| |||||||| Sbjct 70539 TTG-GCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGATGCTGGAGGGACGTCATC 70481 Query 1832 GATGACGTTATACCATGCCTCGTTAGAGAAAATCTTATCGTTCAGATCCA-AATGGCCGC 1890 |||||||||||||||| ||| || || || |||| || | ||||| || | || Sbjct 70480 TATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTATTGAAATCCATAACGCCCAT 70421 Query 1891 AAAGATAATTATGAGGACCCAATGCTCTTGCCCA 1924 |||| |||||||| |||||||| ||| ||||| Sbjct 70420 AAAG-TAATTATGTGGACCCAAACTTCTAGCCCA 70388 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 131/190 (69%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 1676 TTTATAAGAGGATTTGGGACCTGGGTTACAGAGAAAGATGGTGGGGATTCCACCTTTAAT 1735 |||||| || | | || || || || || || | ||| | | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1736 GTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTTGCGCGCCCATGAATTC 1795 || || |||||||| ||| |||| | |||||||| | || ||||| | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1796 TTTGAAATGTTTC------AAATAATGTGGATCAACGTCATCGATGACGTTATACCATGC 1849 || |||| ||| ||||||| ||| | |||||||||||||||||||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1850 CTCGTTAGAG 1859 || || ||| Sbjct 206 ATCATTTGAG 197 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 121/174 (70%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 1692 GGACCTGGGTTACAGAGAAAGATGGTGGGGATTCCACCTTTAATGTGTGTGGGCTTTCCG 1751 || || || || || || | ||| | || || || |||||||| || | || |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1752 TATTTTACATTTGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTC--- 1808 || ||| |||| | ||| |||| || ||||| | ||| | || | |||| ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1809 ---AAATAATGTGGATCAACGTCATCGATGACGTTATACCATGCCTCGTTAGAG 1859 ||||||| ||| || || |||||||||||||||||| | || || ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAG 2087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8612600784060