Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005807.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq3283 87.8 3e-14 seq3439 84.2 4e-13 seq22495 78.8 2e-11 seq5745 77.0 6e-11 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1710 GGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1769 || || |||||||| || | ||| |||| || || ||||||||||||| |||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1770 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1824 ||||| | ||| ||||| | | || || || | ||||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1825 -TTAGATAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTT 1873 ||| ||| | ||| ||||| || |||||||| ||||| || || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq3439 Length=62978 Score = 84.2 bits (92), Expect = 4e-13 Identities = 116/163 (71%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1717 GATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTGG 1776 ||||||| || | ||| |||| || || ||||||||||||| |||||| |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1777 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------TTAGAT 1830 |||| ||||| | | || || || | ||||| || | | |||| ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1831 AGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTT 1873 | | ||| || ||||| |||||||| ||||| || || || Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1710 GGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1769 || || |||||||| || | ||| || | || || | ||||||||||| |||||| ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1770 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1824 ||||| | ||| ||||||| | || || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1825 -TTAGATAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTT 1873 ||| ||| | ||| | |||||| |||||||| ||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq5745 Length=45059 Score = 77.0 bits (84), Expect = 6e-11 Identities = 117/167 (70%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1713 CCTGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTAC 1772 || |||||||| | | ||| ||| || || ||||||||||||| |||||| |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1773 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------TT 1826 || | || ||||| | | ||| || || ||||||| || | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1827 AGATAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTT 1873 | ||| ||| | ||||||||||||||| ||||| || ||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8788187314275