Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005844.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq3283 107 3e-20 seq3439 104 4e-19 seq22495 91.5 3e-15 seq5745 80.6 5e-12 seq30129 78.8 2e-11 seq442 78.8 2e-11 seq35612 77.0 6e-11 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 177/254 (70%), Gaps = 10/254 (4%) Strand=Plus/Minus Query 1666 GGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCG 1725 || ||||||||||| || | |||| | ||||| || ||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1726 TACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAATGCT----- 1780 ||||| | ||| ||||| | | || || || | ||||| || | |||||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1781 -TTAGGTAGTGGGGGTCGACGTCATCAATCACGTTGTACCAAGCATCATTACTGTAGACC 1839 ||| || | || |||||| || || ||||| ||||| |||||||| || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACG 2106 Query 1840 TTTGGG--CTCAGGTCCAGGTGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCC 1897 ||| || | | |||| ||| || || |||||||||||||| || | |||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1898 ACATTGTCTTCCCT 1911 | ||| |||||| Sbjct 2045 ATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 223/332 (67%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 1588 AATTCTGCATTCTTGAGAGTCCAATTCTTTAGTGCAGCATTCTTTTCCTCGTCTATGTAC 1647 ||||||||||| | ||||||||| | || | ||| ||| |||| | || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1648 TCTTTATAGCTGGAGTTGGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTA 1707 ||||||| | | || ||| ||||||| || | |||| | ||||| || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1708 ATTTGAACTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAC 1767 ||||||||||| || |||||||| | |||| ||||| | | || || || | |||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1768 TCTTTAAAATGCT------TTAGGTAGTGGGGGTCGACGTCATCAATCACGTTGTACCAA 1821 | || | |||||| ||| || | || ||| ||||| || ||||| ||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1822 GCATCATTACTGTAGACCTTTGGG--CTCAGGTCCAGGTGTCCACATAAATAATTGTGTG 1879 |||||||| || || ||| || | | |||| ||| || || ||||||| Sbjct 801 GCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTG 744 Query 1880 GGCCTAAAGACCTGGCCCACATTGTCTTCCCT 1911 ||||||| || | ||||| ||| |||||| Sbjct 743 GGCCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1666 GGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCG 1725 || ||||||||||| || | |||| | |||| || | ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1726 TACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAATGCT----- 1780 ||||| | ||| ||||||| | || || || | ||||| || | |||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1781 -TTAGGTAGTGGGGGTCGACGTCATCAATCACGTTGTACCAAGCATCATT 1829 ||| || | || || |||||| || ||||| ||||| |||||||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 5e-12 Identities = 120/169 (71%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 1669 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1728 ||||||||||| | | |||| ||||| || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1729 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAATG--CTTTAGGT 1786 || | || ||||| | | ||| || || ||||||| || | |||| |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1787 A------GTGGGGGTCGACGTCATCAATCACGTTGTACCAAGCATCATT 1829 | ||| || || ||||||||| ||||| ||||| || || || Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1666 GGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCG 1725 || ||||||||||| || | |||| | ||||| || ||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1726 TACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAATGCTT 1781 ||||| | ||| ||||| | | || || || | ||||| || | ||||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq442 Length=237535 Score = 78.8 bits (86), Expect = 2e-11 Identities = 97/133 (73%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1650 TTTATAGCTGGAGTTGGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAAT 1709 ||||||| | || || ||||||||||| || |||| | ||||| | |||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1710 TTGAACTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTC 1769 |||||||| || |||||||| | ||| ||| ||| | ||| || || | ||||| Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1770 TTTAAAATGCTTT 1782 || | |||||||| Sbjct 22882 TTAATAATGCTTT 22894 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1666 GGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCG 1725 || ||||||||||| || | |||| | ||||| || ||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1726 TACTTCGTGTTGCTTTGCCA 1745 ||||| | |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8657358174920