Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005845.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq3439 93.3 7e-16 seq22495 80.6 5e-12 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 178/258 (69%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1670 GGTCCCGGATTGCAGAGGAAGATGGTGGGAATTCCACCTTTAATCATGACTGGCTTTCCG 1729 ||||| ||||||| || | ||| | ||||| || |||||||| ||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1730 TACTTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATGAATTCTTTAAAATGCT----- 1784 ||||| | |||| ||||| | || ||| || || | ||| | || | |||||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1785 -TTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTACCAAGCATCATTACTGTACACC 1843 ||| ||| | || || ||||| |||||||| ||||| |||||||| |||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTAC-GT 785 Query 1844 TTTGGACTT-AAGTCAAGTGGCCGCA-CAAGTAATTGTGT--CCCCAAAGAACGCGCCCA 1899 |||||| || || || | | || | ||| |||||| || || ||||| ||||| Sbjct 784 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 Query 1900 CGCAGTTTTGCCCGTTCT 1917 || ||||| || |||| Sbjct 724 TGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 80.6 bits (88), Expect = 5e-12 Identities = 133/191 (70%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 1670 GGTCCCGGATTGCAGAGGAAGATGGTGGGAATTCCACCTTTAATCATGACTGGCTTTCCG 1729 ||||| |||||||| || | ||| | |||| || | |||||| ||||| |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1730 TACTTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATGAATTCTTTAAAATGCT----- 1784 ||||| | ||| ||||||| | ||| || || | ||| | || | |||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1785 -TTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTACCAAGCATCATTACTGTACACC 1843 ||| ||| | || | |||||| |||||||| ||||| |||||||| |||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTAC-GT 192 Query 1844 TTTGGACTTAA 1854 |||||| |||| Sbjct 191 TTTGGAATTAA 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8647767305450