Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_005855.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq3283 122 2e-24 seq3439 118 2e-23 seq22495 98.7 2e-17 seq953 91.5 3e-15 seq815 91.5 3e-15 seq54129 89.7 9e-15 seq20728 87.8 3e-14 >seq3283 Length=49157 Score = 122 bits (134), Expect = 2e-24 Identities = 186/260 (72%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 1685 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1744 |||||| |||||||| || | |||| | ||||| || ||||||||||||| || ||||| Sbjct 2284 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCC 2225 Query 1745 ATACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1800 ||||||| ||| ||||| | | ||| || || | ||| | |||| | |||| Sbjct 2224 GTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 2166 Query 1801 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACA 1857 ||||||||| ||| ||||| || |||||||| ||||| |||||||| |||| Sbjct 2165 TAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC- 2107 Query 1858 CCTTTGGACTT-AGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCC 1916 |||||| || | || | | ||| || ||||| |||||||||| || | |||| Sbjct 2106 GTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1917 CACATTGTTTTGCCTGTTCT 1936 || |||||| ||| |||| Sbjct 2046 CATGCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 118 bits (130), Expect = 2e-23 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 1685 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1744 |||||| ||||||| || | |||| | ||||| || ||||||||||||| || || || Sbjct 964 AGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 905 Query 1745 ATACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1800 ||||||| |||| ||||| | | ||| || || | ||| | |||| | |||| Sbjct 904 GTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCT 846 Query 1801 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACA 1857 ||||||||| ||| || ||||| |||||||| ||||| |||||||| |||| Sbjct 845 TAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTAC- 787 Query 1858 CCTTTGGACTT-AGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCC 1916 |||||| || | || | | ||| || ||||| |||||||||| || | |||| Sbjct 786 GTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 727 Query 1917 CACATTGTTTTGCCTGTTCT 1936 || |||||| ||| |||| Sbjct 726 CATGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 1685 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1744 |||||| |||||||| || | |||| | |||| || | ||||||||||| || || || Sbjct 371 AGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCC 312 Query 1745 ATACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1800 ||||||| ||| ||||||| | ||| || || | ||| | |||| | |||| Sbjct 311 GTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT-GTTGACAATGCTTCT 253 Query 1801 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACA 1857 ||||||||| ||| | |||||| |||||||| ||||| |||||||| |||| Sbjct 252 TAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTAC- 194 Query 1858 CCTTTGGACTT-AGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTA 1905 |||||| || | || | | ||| || ||||| |||||||||| Sbjct 193 GTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTA 145 >seq953 Length=224861 Score = 91.5 bits (100), Expect = 3e-15 Identities = 177/259 (68%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 1685 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1744 |||||| |||||||| | | |||| | ||||| || |||||||||||||| | || || Sbjct 1839 AGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCC 1898 Query 1745 ATACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1800 ||||||| ||| ||||| | | ||| | || | ||| | |||| | | || Sbjct 1899 GTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACT-GTTGATAATACTTTT 1957 Query 1801 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACA 1857 ||||||||| ||| ||||| || || ||||| ||||| |||||||| |||| Sbjct 1958 TAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACG 2017 Query 1858 CCTTTGGACTTAGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCCC 1917 || | | | | || | | || || ||||| |||||||||| || | ||||| Sbjct 2018 TTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2077 Query 1918 ACATTGTTTTGCCTGTTCT 1936 | |||||| ||| |||| Sbjct 2078 ATGCTGTTTTCCCTATTCT 2096 >seq815 Length=151552 Score = 91.5 bits (100), Expect = 3e-15 Identities = 179/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 1685 AGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCC 1744 |||||| |||||||| || | ||| | ||||| || |||||||||||| ||| || | Sbjct 85425 AGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTC 85366 Query 1745 ATACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGA-AGTGCT--- 1800 ||||||| ||| | ||||| | ||| || || | ||| | |||| | | || Sbjct 85365 GTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACT-ATTGATAATACTTCT 85307 Query 1801 ---TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACA 1857 ||||||||| | | ||||| || |||||||| ||||| |||||||| |||| Sbjct 85306 AAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC- 85248 Query 1858 CCTTTGGACTT-AGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCC 1916 |||||| || | || | | ||| || ||||| |||| ||||| | | |||| Sbjct 85247 GTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCC 85188 Query 1917 CACATTGTTTTGCCTGTTCT 1936 || || |||| ||| |||| Sbjct 85187 CATGTTATTTTCCCTATTCT 85168 >seq54129 Length=2260 Score = 89.7 bits (98), Expect = 9e-15 Identities = 176/258 (68%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1686 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCA 1745 ||||| |||||||| || | |||| | ||||| || |||||||||||||| || || || Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1746 TACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCT----- 1800 ||||||| ||| || |||| ||| || || | ||| | | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1801 -TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACC 1859 ||||||||| ||| || || || |||||||| ||||| ||||||| ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA-TGT 2082 Query 1860 TTTGGACTT-AGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCCCA 1918 |||||| || | | | | ||| || ||||| ||| ||| || || | |||||| Sbjct 2081 TTTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 Query 1919 CATTGTTTTGCCTGTTCT 1936 |||||| ||| |||| Sbjct 2021 TGCTGTTTTTCCTATTCT 2004 >seq20728 Length=3653 Score = 87.8 bits (96), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 1713 GGAATTCCCCCTTTAATTTGAATGGGCTTCCCATACTTTGTGTTGCTTTGCCAGTCCCTC 1772 ||||| |||||||||||||||| || || || ||||||| ||| |||| || | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1773 TGGGCCCCCATGAATTCCTTGA-AGTGCT------TTAAATAATGCGGGTCTACGTCATC 1825 || || || | ||| | |||| | |||| ||||||||| ||| |||||||| Sbjct 1501 TGTGCGCCTACGAACT-GTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1826 AATGACGTTGTACCACGCATCATTACTGTACACCTTTGGACTTAGGTCTAGATGTCCACA 1885 |||||||| || || |||||||| |||| || | | | | |||| | || Sbjct 1560 GATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCTCAT 1619 Query 1886 TAAATAGTTATGTGGGCCTAGAGACCTAGCCCACATTGTTTTGCCTGTTCT 1936 || ||||| |||||| ||| || | |||||| |||||| ||| |||| Sbjct 1620 TATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8772202979400