Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006358.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq3439 118 2e-23 seq3283 118 2e-23 seq490 98.7 2e-17 seq4295 89.7 9e-15 seq1010 86.0 1e-13 >seq3439 Length=62978 Score = 118 bits (130), Expect = 2e-23 Identities = 214/308 (69%), Gaps = 10/308 (3%) Strand=Plus/Minus Query 1588 TCGAAGAACTCCTTATATGAAGATTGTGGACCAGGATTGCAGAGGAAGATTGTTGGGATT 1647 || |||||| ||||| || ||| || ||| ||||||| || | ||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1648 CCTCCTTTAATTTGAATAGGTTTCCCGTACTTGCAGTTCGATTGCCAGTCTCTCTGGGCC 1707 || ||||||||||||| ||||| |||||||| ||| | ||||| | || ||| || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1708 CCCATAAATTCCTTCATA-----TGTT--TGAGGAAGTGCGGATCTACGTCATCAATGAC 1760 || | || | || ||| | || | | | | |||| || ||||| ||||| Sbjct 870 CCTACGAACTG-TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1761 GTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCA-AATGCCCACACAGAT 1819 ||||||||| |||| ||| ||||| ||| | ||| ||||| || |||| | | Sbjct 811 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATG-T 753 Query 1820 AATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCTGGATGGGCCTTCGA 1879 | ||||| |||||||| | |||||| |||||| ||| |||| ||||||||||| | Sbjct 752 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAA 693 Query 1880 TTATTATG 1887 | || ||| Sbjct 692 TAATAATG 685 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 200/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 1615 GGACCAGGATTGCAGAGGAAGATTGTTGGGATTCCTCCTTTAATTTGAATAGGTTTCCCG 1674 || ||||||||||| || | ||| |||| || || ||||||||||||| ||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1675 TACTT-GCAGTTCGATTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTCATA-----TGT 1728 ||||| ||| || | ||||| | || ||| || || | || | || ||| | | Sbjct 2223 TACTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG-TTGATAATGCTTCT 2166 Query 1729 T--TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCACGCATTATTAGAGTATA 1786 | | | | | |||| ||||| || |||||||||||||| |||| ||| ||||| Sbjct 2165 TAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACG 2106 Query 1787 CTTTTGGGCTAAGATCCA-AATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCC 1845 ||| | ||| ||||| || |||| | || ||||| |||||||| | ||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATG-TAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1846 CATAATGTTTTACCTGTTCTGGATGGGCCTTCGATTATTATG 1887 ||| |||||| ||| |||| ||||||||||| || || ||| Sbjct 2046 CATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATG 2005 >seq490 Length=137872 Score = 98.7 bits (108), Expect = 2e-17 Identities = 197/284 (69%), Gaps = 10/284 (4%) Strand=Plus/Minus Query 1623 ATTGCAGAGGAAGATTGTTGGGATTCCTCCTTTAATTTGAATAGGTTTCCCGTACTTGCA 1682 |||||| |||| |||| ||| ||||| ||||||||||| || || || | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1683 GTTCGATTGCCAGTCTCT-CTGGGCCCCCATAAATTCCTTCATATG----TTTGAG-GAA 1736 | | ||||||| || | || |||||| |||| ||| || ||| || || || Sbjct 70558 ATCAGCTTGCCAG-CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAG 70500 Query 1737 GTGC-GGATCTACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGC 1795 ||| ||| |||||||| |||||||||||||| | | ||| || || ||| Sbjct 70499 ATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTAT 70440 Query 1796 TAAGATCCA-AATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTT 1854 | | ||||| || ||||| | || ||||| || || || ||||| || |||||| || Sbjct 70439 TGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCATTCAGTC 70381 Query 1855 TTACCTGTTCTGGATGGGCCTTCGATTATTATGGATATAGGTCT 1898 || || ||| ||||| ||||| || |||| || || || || Sbjct 70380 TTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCT 70337 >seq4295 Length=67413 Score = 89.7 bits (98), Expect = 9e-15 Identities = 185/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 1621 GGATTGCAGAGGAAGATTGTTGGGATTCCTCCTTTAATTTGAATAGGTTTCCCGTACTTG 1680 |||||| |||| | |||| ||||||||| |||||||||||| ||||| ||||||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1681 CAGTTCGATTGCCAGTCTCTCTGGGCCCCCATAAATTCCTT--CATA-TGTTTGAGGAAG 1737 || || | ||| | ||||||| | || | || || ||| | ||| | || Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1738 TGCG---GATCTACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGG 1794 | | || ||||||||| || ||||| ||||| |||||||| || || ||| | Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAA 46664 Query 1795 CTAAGATCCA-AATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGT 1853 ||| ||||| | ||||| | || || || |||| |||| || ||||||| ||| Sbjct 46663 TTAAAATCCATGAAGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGT 46605 Query 1854 TTTACCTGTTCTGGATGGGCCTTCGATTAT 1883 || |||| | ||||| ||| | ||| Sbjct 46604 CTTTAAAATTCTAGTTGGGCATTCTAATAT 46575 >seq1010 Length=204159 Score = 86.0 bits (94), Expect = 1e-13 Identities = 196/291 (67%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 1600 TTATATGAAGATT--GTGGACCAGGATTGCAGAGGAAGATTGTTGGGATTCCTCCTTTAA 1657 ||||| || ||| ||| || ||||||||||| | ||| ||||||| | |||||| Sbjct 36464 TTATACTAATATTCGGTGTCCCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAA 36523 Query 1658 TTTGAATAGGTTTCCCGTACTTGCAGTTCGATTGCCAGTCTCTCTGGGCCCCCATAAATT 1717 |||||| |||| ||||||||| | |||||||| | || ||||| || | | Sbjct 36524 TTTGAACTAGTTTACCGTACTTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCT 36583 Query 1718 CCTTCATATGTTTGAGGAAGTGCGGATC----TACGTCATCAATGACGTTATACCACGCA 1773 | ||| || ||| | | ||||| || ||||| |||| |||||||| ||| Sbjct 36584 CTTTCCAATTTTTTTTGCAAATAGGATCGAGACACATCATCTATGAAATTATACCATGCA 36643 Query 1774 TTATTAGAGTATACTTTTGGGCTAAGATCCA-AATGCCCACACAGATAATTGTGAGGGCC 1832 ||| | || || ||| | ||| ||||| | ||||| | || || | ||||| Sbjct 36644 TTAATCGAAAATGATTTCGAATTAAAATCCATGAAGCCCA-TTATGTAGTTACGTGGGCC 36702 Query 1833 TAAACTCCTGGCCCATAATGTTTTACCTGTTCTGGATGGGCCTTCGATTAT 1883 |||| | ||||||| ||| || || |||| | ||||||||| | ||| Sbjct 36703 TAAAGATCGTGCCCATATTGTCTTCCCAATTCTAGCTGGGCCTTCTAATAT 36753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8599812958100