Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006384.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq3283 109 9e-21 seq3439 105 1e-19 seq22495 95.1 2e-16 seq5745 89.7 9e-15 seq77518 86.0 1e-13 seq35612 86.0 1e-13 seq953 82.4 1e-12 seq442 80.6 5e-12 seq54129 78.8 2e-11 seq5493 78.8 2e-11 seq4104 77.0 6e-11 >seq3283 Length=49157 Score = 109 bits (120), Expect = 9e-21 Identities = 197/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 1652 TCCAAGAATTCTTTATATGAT-GATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGAT 1710 |||||||| |||||| ||| ||| || || |||||||| || | |||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1711 TCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGC 1770 || ||||||||||||| ||||||||||||||| | ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1771 CCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGAC 1824 || | ||| | || | | |||| ||| ||| | || ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1825 GTTATACCAAGCATCATTATTGTATAC-TTTTGGGCTT-AGATCAAGATGTCCACACAAA 1882 ||||||||| ||||||| ||| ||| |||||| || | ||| | | ||| | Sbjct 2131 GTTATACCATGCATCAT--TTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATG 2074 Query 1883 TAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCT 1924 || |||||||| || | ||| | ||||| |||||| ||| Sbjct 2073 TAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 194/281 (69%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 1652 TCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1711 || ||||| |||||| ||| || || || ||||||| || | |||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1712 CCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCC 1771 || ||||||||||||| |||||| |||||||| | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1772 CCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACG 1825 || | ||| | || | | |||| ||| ||| | || || ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1826 TTATACCAAGCATCATTATTGTATAC-TTTTGGGCTT-AGATCAAGATGTCCACACAAAT 1883 |||||||| ||||||| ||| ||| |||||| || | ||| | | ||| | | Sbjct 810 TTATACCATGCATCAT--TTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGT 753 Query 1884 AATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCT 1924 | |||||||| || | ||| | ||||| |||||| ||| Sbjct 752 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 95.1 bits (104), Expect = 2e-16 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1652 TCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1711 || |||||| |||||| ||| | || || |||||||| || | |||| || | || Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1712 CCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCC 1771 || | ||||||||||| |||||| |||||||| | ||| ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1772 CCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACG 1825 || | ||| | || | | |||| ||| ||| | || | |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1826 TTATACCAAGCATCATT 1842 |||||||| |||||||| Sbjct 217 TTATACCATGCATCATT 201 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 191/283 (67%), Gaps = 13/283 (5%) Strand=Plus/Plus Query 1652 TCCAAGAATTCTTTATATGATGATGTTGGGCCT---GGATTGCAGAGGAAGATAGTTGGG 1708 || ||||| ||||||| ||| | ||| || |||||||| | | |||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1709 ATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGG 1768 || |||||||||||||||| |||||| |||||||| | || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1769 GCCCCCATGAATTCTT--TAAAGTGCTTTAGATA------GTGGGGGTCTACGTCATCAA 1820 || || ||||| | || ||| || |||| || ||| || | |||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAA 43685 Query 1821 TGACGTTATACCAAGCATCATTATTGTATACTTTTGGGCTTAGATCAAGATGTCCACACA 1880 ||||||||||||| || || || ||| ||| | | | ||| | | || | Sbjct 43686 TGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTA 43745 Query 1881 AATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1923 |||||| ||||| |||| || | ||||| | ||||||||| Sbjct 43746 TATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 190/283 (67%), Gaps = 13/283 (5%) Strand=Plus/Minus Query 1652 TCCAAGAATTCTTTATATGATGATGTTGGGCCT---GGATTGCAGAGGAAGATAGTTGGG 1708 ||||||||| ||||||| ||| | ||| || |||||||| || | |||| ||| Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1709 ATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGG 1768 || || ||||||||||||| || ||| ||||||| | || || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1769 GCCCCCATGAATTCTTTAAAGTGCT------TTAGATA--GTGGGGGTCTACGTCATCAA 1820 || || | ||| | || | | |||| ||| ||| ||| || || ||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAA 2256 Query 1821 TGACGTTATACCAAGCATCATTATTGTATACTTTTGGGCTTAGATCAAGATGTCCACACA 1880 ||||||||||||| || || || |||| ||| | | ||| | | || | Sbjct 2255 TGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTA 2196 Query 1881 AATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACC 1923 |||||| ||||| |||| | | ||||| | ||||||||| Sbjct 2195 TATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1652 TCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1711 ||||||||| |||||| ||| | || || |||||||| || | |||| |||| || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1712 CCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCA 1758 || ||||||||||||| |||||| |||||||| | |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 136/197 (69%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 1652 TCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1711 || |||||| |||||| ||| | || || |||||||| | | |||| |||| || Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1712 CCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCC 1771 || |||||||||||||||| ||| |||||||| | ||| ||||| | | || | Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACG 1932 Query 1772 CCCATGAATTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACG 1825 || | ||| | || | | | || ||| ||| | || ||||| || || ||| Sbjct 1933 CCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACG 1992 Query 1826 TTATACCAAGCATCATT 1842 |||||||| |||||||| Sbjct 1993 TTATACCATGCATCATT 2009 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 5e-12 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1652 TCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1711 ||||||||| |||||| ||| | | || || |||||||| || |||| |||| || Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1712 CCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCC 1771 | ||||||||||||| || ||| |||||||| | ||| ||| ||| | ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1772 CCCATGAATTCTTTAAAGTGCTTT 1795 || | ||| | || | | |||||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTT 22894 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 129/185 (70%), Gaps = 7/185 (4%) Strand=Plus/Minus Query 1679 GGGCCTGGATTGCAGAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCG 1738 || || |||||||| || | |||| |||| || || |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1739 TACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1793 ||||| | ||| || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1794 -TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTATACT 1852 ||| ||| | || || || || |||||||||||||| ||||||| |||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GT 2082 Query 1853 TTTGG 1857 ||||| Sbjct 2081 TTTGG 2077 >seq5493 Length=32325 Score = 78.8 bits (86), Expect = 2e-11 Identities = 144/204 (71%), Gaps = 9/204 (4%) Strand=Plus/Minus Query 1648 TTCGTCCAAGAATT-CTTTATATGATGATGTT---GGGCCTGGATTGCAGAGGAAGATAG 1703 || || |||||| | ||||||| || || | | || ||||||||| | | ||| Sbjct 31600 TTTGTTCAAGAAATGCTTTATAGGAATATTCTCCGGTGCATGGATTGCACATCACAATAC 31541 Query 1704 TTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCC 1763 || |||||||| ||||||||||| |||||| |||||||| || |||||||| Sbjct 31540 ATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTCACATTTGATTGCCAGTTGT 31481 Query 1764 TTTGGGCCCCCATGAATTCTTTAAAG-TGCTTT--AGATA-GTGGGGGTCTACGTCATCA 1819 ||| | || | | ||||| || | |||| ||||| || || | |||||||||| Sbjct 31480 ATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTTGCAGATATGTCGGTG-ATACGTCATCA 31422 Query 1820 ATGACGTTATACCAAGCATCATTA 1843 |||| ||| ||||| ||| |||| Sbjct 31421 ATGATGTTGTACCATGCACGATTA 31398 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1652 TCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATT 1711 |||||||| |||||| ||| | || || |||||||| || | |||| |||| || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1712 CCACCTTTAATTTGAATTGGTTTCCCGTACTT 1743 || ||||||||||||| |||||| |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8634979479490