Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006631.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq3283 116 6e-23 seq3439 113 8e-22 seq22495 102 1e-18 seq77518 82.4 1e-12 seq35612 82.4 1e-12 seq5745 82.4 1e-12 seq33 82.4 1e-12 seq1993 80.6 5e-12 seq54129 78.8 2e-11 seq30129 78.8 2e-11 >seq3283 Length=49157 Score = 116 bits (128), Expect = 6e-23 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1676 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1735 || ||||||||||| || | ||| | || || |||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1736 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1790 ||||||| |||| ||||| | | || || || | ||||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1791 -TGAGGAAGTGCGGGTTGACGTCATCAATGATGTTATACCAAGCATCATTGCTGTACACT 1849 | | | | ||| |||||| || |||| ||||||||| |||||||| |||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1850 TTGGGACTTAAGTCTAGATGGCCACACAAATAGTTGTGTGGGCCTAGCGACCTAGCCCA 1908 |||| | | || || | | || | |||||||||||||||| || | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1676 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1735 || ||| ||||||| || | ||| | || || |||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1736 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1790 ||||||| ||||| ||||| | | || || || | ||||| || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1791 -TGAGGAAGTGCGGGTTGACGTCATCAATGATGTTATACCAAGCATCATTGCTGTACACT 1849 | | | | ||| ||| ||||| |||| ||||||||| |||||||| |||| | Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1850 TTGGGACTTAAGTCTAGATGGCCACACAAATAGTTGTGTGGGCCTAGCGACCTAGCCCA 1908 |||| | | || || | | || | |||||||||||||||| || | |||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 1676 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1735 || ||||||||||| || | ||| | | || |||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1736 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1790 ||||||| |||| ||||||| | || || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1791 -TGAGGAAGTGCGGGTTGACGTCATCAATGATGTTATACCAAGCATCATTGCTGTACACT 1849 | | | | ||| || |||||| |||| ||||||||| |||||||| |||| | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1850 TTGGGACTTAAGTCTAGATGGCCACACAAATAGTTGTGTGGGCCTA 1895 |||| | | || || | | || | |||||||||||||||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTA 145 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1679 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1738 ||||||||||| || | ||| || || ||||||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1739 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGC---TTGAGG 1795 |||| || || || |||| | ||| || || | ||||| || | | ||| || | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1796 AAGT--GC-GGGTTGACGTCATCAATGATGTTATACCAAGCATCATT 1839 || | || || ||| |||||||||| ||||||||| || || || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1676 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1735 || ||||||||||| || | ||| | || || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1736 TACTTTGTGTTGGATTGCCA 1755 ||||||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq5745 Length=45059 Score = 82.4 bits (90), Expect = 1e-12 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1679 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1738 ||||||||||| | | ||| || || || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1739 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1795 |||| || || ||||| | | ||| || || ||||||| || ||| | | || | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1796 AAGT--GC-GGGTTGACGTCATCAATGATGTTATACCAAGCATCATT 1839 || | || || || ||||||||||| ||||||||| || || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1649 TCGAGGAATTCTTTATAA--CTGCTGTTGGGACCAGGATTGCATAGGAAGATTGTCGGTA 1706 |||| ||| |||||||| | || | | ||||||||||| || | ||| || | Sbjct 403334 TCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAA 403275 Query 1707 TTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGG 1766 | |||| ||||||||||||||| || |||||||||| || || ||||||| | || Sbjct 403274 TCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTA 403215 Query 1767 CCCCCATGAACTCTT--TAAAG-TGCTTGAGGAAGT--GC-GGGTTGACGTCATCAATGA 1820 | || | ||||| || ||| | | || | || | || || |||||||||||||| Sbjct 403214 CGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGA 403155 Query 1821 TGTTATACCAAGCATCATT 1839 ||||||||| || || || Sbjct 403154 CGTTATACCACGCGTCGTT 403136 >seq1993 Length=81530 Score = 80.6 bits (88), Expect = 5e-12 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1679 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1738 ||||||||||| || | ||| || || ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1739 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1795 |||| || || ||||| | | ||| || | | ||||| || ||| | | || | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1796 AAGT--GC-GGGTTGACGTCATCAATGATGTTATACCAAGC 1833 || | || || |||||||||||||| ||||||||| || Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1676 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1735 || ||||||||||| || | ||| | || || |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1736 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTG 1792 ||||||| |||| || |||| || || || | ||||| || ||| | | ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1793 AGGA---AGTGCGGGTTGACGTCATCAATGATGTTATACCAAGCATCATT 1839 | | | | ||| ||| || || |||| ||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1676 GGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1735 || ||||||||||| || | ||| | || || |||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1736 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1791 ||||||| |||| ||||| | | || || || | ||||| || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8673342957370