Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006874.1 Length=2777 Score E Sequences producing significant alignments: (Bits) Value seq3283 96.9 6e-17 seq3439 93.3 7e-16 seq22495 89.7 9e-15 seq54129 78.8 2e-11 seq35612 77.0 6e-11 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1691 GGGCCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1750 || || |||||||| || | ||| | ||||| |||||||||||||||| ||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1751 TACTTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTCCTTAAAGTGCT----- 1805 ||||||| ||| ||||| | | ||| || || | || | | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1806 -TTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATT 1854 ||| ||||| ||| ||||| || |||||||| ||||| |||||||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1675 TTTATAGGACGACGTTGGGCCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAAT 1734 ||||||||| | || || ||||||| || | ||| | ||||| ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1735 TTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTC 1794 ||||| ||| || |||||||||| |||| ||||| | | ||| || || | || | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1795 CTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGC 1848 | | | |||| ||| ||||| ||| || ||||| |||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1849 ATCATT 1854 |||||| Sbjct 799 ATCATT 794 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 9e-15 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1675 TTTATAGGACGACGTTGGGCCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAAT 1734 ||||||||| | || || |||||||| || | ||| | |||| |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1735 TTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTC 1794 ||||| ||| || |||||||||| ||| ||||||| | ||| || || | || | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1795 CTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGC 1848 | | | |||| ||| ||||| ||| | |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1849 ATCATT 1854 |||||| Sbjct 206 ATCATT 201 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1691 GGGCCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1750 || || |||||||| || | ||| | ||||| |||||||||||||||||||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1751 TACTTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTCCTTAAAGTGCT----- 1805 ||||||| ||| || |||| ||| || || | || | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1806 -TTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATT 1854 ||| ||||| ||| || || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1664 TCCAGAAATTCTTTATAGGACGACGTTGGGCCTGGATTGCATAGGAAGATTGTGGGAATT 1723 |||| ||| ||||||||| | || || |||||||| || | ||| | ||||| Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1724 CCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCA 1770 |||||||||||||||| ||| || |||||||||| |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8765809245450