Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006876.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq3439 104 4e-19 seq3283 100 5e-18 seq54129 82.4 1e-12 seq5745 82.4 1e-12 seq953 78.8 2e-11 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1664 TCTAGGAACTCTTTATACGAGGATGTTGGTCCTGGATTGCAGAGGAAGATTGTGGGAATC 1723 |||| |||| |||||| || || ||||| ||||||| || | ||| | |||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1724 CCGCCTTTTATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGTGCC 1783 |||||||| ||||||| ||| || |||||||| | |||| ||||| | | ||||| Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1784 CCCATGAATTCTTTAAAGTGTTTC------AGGTAATGCGGATCTACGTCATCAATGACG 1837 || | ||| | || | | || ||| | |||| |||| || ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1838 TTGTACCACGCATCATT 1854 || ||||| |||||||| Sbjct 810 TTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1691 GGTCCTGGATTGCAGAGGAAGATTGTGGGAATCCCGCCTTTTATTTGAATTGGCTTCCCG 1750 ||||| |||||||| || | ||| | |||||||||||||| ||||||| ||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1751 TACTTCGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATGAATTCTTTAAAGTGTTTC--- 1807 ||||| | ||| ||||| | | ||||| || | ||| | || | | || ||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1808 ---AGGTAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1854 | |||| |||| ||||| || |||||||| ||||| |||||||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1691 GGTCCTGGATTGCAGAGGAAGATTGTGGGAATCCCGCCTTTTATTTGAATTGGCTTCCCG 1750 ||||| |||||||| || | ||| | |||||||||||||| ||||||||||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1751 TACTTCGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATGAATTCTT--TAAAG--TGTT- 1805 ||||| | ||| || |||| ||||| || | ||| | || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1806 -TCAGGTAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1854 | | |||| |||| || || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq5745 Length=45059 Score = 82.4 bits (90), Expect = 1e-12 Identities = 192/286 (67%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 1664 TCTAGGAACTCTTTATACGAGGATGTTGGTCCT---GGATTGCAGAGGAAGATTGTGGGA 1720 |||| |||| ||||||| || | ||| || |||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1721 ATCCCGCCTTTTATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGT 1780 ||||| ||||| ||||||| ||| || |||||||| | || ||||| | | |||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1781 GCCCCCATGAATTCTT--TAAAGTGTTTCAGGTAAT---GC-GGATCTACGTCATCAATG 1834 || || ||||| | || ||| || ||| | ||| || ||| | |||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1835 ACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTGAGGTCAAGATGGCCGCATAGG 1894 ||||| ||||| || || || || || | | | || | | ||| || Sbjct 43688 ACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATA 43747 Query 1895 TAATTATGTGGACCCAATGATCTGGCCCACATTGTCTTCCCGGTTC 1940 ||||||||||||||||| || | ||||| | ||| || ||| ||| Sbjct 43748 TAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTC 43793 >seq953 Length=224861 Score = 78.8 bits (86), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 1691 GGTCCTGGATTGCAGAGGAAGATTGTGGGAATCCCGCCTTTTATTTGAATTGGCTTCCCG 1750 ||||| |||||||| | | ||| | |||||||||||||| |||||||||| || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1751 TACTTCGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATGAATTCTT--TAA-AGTGTT-- 1805 ||||| | ||| ||||| | | ||| | || | ||| | || ||| | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1806 -TCAGGTAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1854 | | |||| |||| ||||| || || ||||| ||||| |||||||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8737037442675