Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_006995.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq22495 102 1e-18 seq77518 98.7 2e-17 seq3283 98.7 2e-17 seq442 98.7 2e-17 seq3059 96.9 6e-17 seq35612 95.1 2e-16 seq5745 95.1 2e-16 seq1993 89.7 9e-15 seq33 89.7 9e-15 seq30129 87.8 3e-14 seq54129 86.0 1e-13 seq953 86.0 1e-13 seq3439 84.2 4e-13 seq4104 80.6 5e-12 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 || |||||| | |||| ||| || |||||| |||||||| || | |||| | |||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTGGGCC 1770 || | ||||||||||| ||| |||||||| |||| ||| | |||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1771 CCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCAACGTCATCGATGACG 1824 || | ||| | || | | |||| ||| || | ||| | ||||||||||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1825 TTGTACCAGGC 1835 || ||||| || Sbjct 217 TTATACCATGC 207 >seq77518 Length=14724 Score = 98.7 bits (108), Expect = 2e-17 Identities = 146/207 (71%), Gaps = 9/207 (4%) Strand=Plus/Minus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCT---GGATTGCAGAGGAAGATAGTGGGA 1707 ||||||||| || |||| ||| || || || |||||||| || | |||| ||| Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1708 ATTCCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTGG 1767 || || ||||||||||||| || ||| |||| |||| ||||||||| |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1768 GCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCAACGTCATCGATG 1821 || || | ||| | || | | |||| ||| || ||| || ||||| ||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1822 ACGTTGTACCAGGCGCTGTTCGAATAT 1848 ||||| ||||| ||| |||||| ||| Sbjct 2253 ACGTTATACCACGCGTCGTTCGAGTAT 2227 >seq3283 Length=49157 Score = 98.7 bits (108), Expect = 2e-17 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 |||||||| | |||| ||| | |||||| |||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTGGGCC 1770 || ||||||||||||| ||| || ||||| |||| ||| | |||||| | | || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1771 CCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCAACGTCATCGATGACG 1824 || | ||| | || | | |||| ||| || | ||| ||||| ||||||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1825 TTGTACCAGGC 1835 || ||||| || Sbjct 2130 TTATACCATGC 2120 >seq442 Length=237535 Score = 98.7 bits (108), Expect = 2e-17 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 ||||||||| | |||| ||| || ||||||| |||||||| || |||| | ||||| Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTGGGCC 1770 | ||||||||||||| || |||||||| |||| ||| | |||| ||| | ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1771 CCCATGAATTCTTTAAAGTGCTTT 1794 || | ||| | || | | |||||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTT 22894 >seq3059 Length=182465 Score = 96.9 bits (106), Expect = 6e-17 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 |||||||| | ||| ||| || |||||| |||||||| || | |||| | ||||| Sbjct 20446 TCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20387 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTGGGCC 1770 || ||||||||||||||||| |||||||| |||| ||| | || ||||| | || || Sbjct 20386 CCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCG 20327 Query 1771 CCCATGAATTCTTTAAAGTGCTT 1793 || | ||| | || | | ||||| Sbjct 20326 CCTACGAACTGTTGATAATGCTT 20304 >seq35612 Length=1588 Score = 95.1 bits (104), Expect = 2e-16 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 ||||||||| | |||| ||| || |||||| |||||||| || | |||| | ||||| Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCA 1757 || ||||||||||||| ||| |||||||| |||| || | |||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq5745 Length=45059 Score = 95.1 bits (104), Expect = 2e-16 Identities = 128/178 (72%), Gaps = 14/178 (8%) Strand=Plus/Plus Query 1681 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTAT 1740 || |||||||| | | |||| ||||| |||||||||||||||| ||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1741 TTTGTATTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGGT 1798 |||| |||||||||||| | | ||| || || ||||| | || ||| || |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1799 A--------GTGGGGATCAACGTCATCGATGACGTTGTACCAGGCGCTGTTCGAATAT 1848 | | ||||| |||||| |||||||| ||||| ||| |||||| ||| Sbjct 43661 AAATAAGCTGGAGGGAT----GTCATCAATGACGTTATACCATGCGTCGTTCGATTAT 43714 >seq1993 Length=81530 Score = 89.7 bits (98), Expect = 9e-15 Identities = 124/174 (71%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 1681 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTAT 1740 || |||||||| || | |||| ||||| || |||||||||||| ||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1741 TTTGTATTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1794 |||| |||||||||||| | | ||| || | | ||| | || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1795 AGGTAGTGGGGATCAACGTCATCGATGACGTTGTACCAGGCGCTGTTCGAATAT 1848 | || ||| |||||||| |||||||| ||||| ||| ||||||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 124/174 (71%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 1681 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTAT 1740 || |||||||| || | |||| ||||| || | ||||||||||| ||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1741 TTTGTATTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1794 |||| |||||||||||||| | || | || | ||| | || | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1795 AGGTAGTGGGGATCAACGTCATCGATGACGTTGTACCAGGCGCTGTTCGAATAT 1848 | || ||| |||||||| |||||||| ||||| ||| |||||| ||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTAT 403129 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 |||||||| | | || ||| || |||||| |||||||| || | |||| | ||||| Sbjct 2344 TCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2403 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTGGGCC 1770 || ||||||||||||| | | |||||||| |||| ||| | |||||| | | || || Sbjct 2404 CCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2463 Query 1771 CCCATGAATTCTTTAAAGTGCTT 1793 || | ||| | || | | ||||| Sbjct 2464 CCTACGAACTGTTGATAATGCTT 2486 >seq54129 Length=2260 Score = 86.0 bits (94), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1678 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCG 1737 ||||| |||||||| || | |||| | ||||| || ||||||||||||||||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1738 TATTTTGTATTTGACTGCCAGT 1759 || |||| ||| | ||| |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGT 2179 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 || |||||| | |||| ||| || |||||| |||||||| | | |||| | ||||| Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCA 1757 || |||||||||||||||| |||||||| |||| ||| |||||| Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCA 1919 >seq3439 Length=62978 Score = 84.2 bits (92), Expect = 4e-13 Identities = 133/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 || ||||| | |||| ||| | |||||| ||||||| || | |||| | ||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTGGGCC 1770 || ||||||||||||| ||| |||||||| |||| || | ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1771 CCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCAACGTCATCGATGACG 1824 || | ||| | || | | |||| ||| || | ||| || |||||||||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1825 TTGTACCAGGC 1835 || ||||| || Sbjct 810 TTATACCATGC 800 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1651 TCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATT 1710 |||||||| | |||| ||| || ||||| |||||||| || | |||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1711 CCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTAT 1747 || ||||||||||||| ||| |||||||| |||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8670146000880