Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007210.2 Length=2758 Score E Sequences producing significant alignments: (Bits) Value seq3439 123 4e-25 seq3283 111 3e-21 seq22495 86.0 1e-13 seq953 84.2 4e-13 >seq3439 Length=62978 Score = 123 bits (136), Expect = 4e-25 Identities = 195/275 (71%), Gaps = 11/275 (4%) Strand=Plus/Minus Query 1683 TTATATGATGATGTCGGTCCCAGGATTGCATAGGAAGATTGTCGGAATGCCCCCTTTAAT 1742 ||||| ||| || ||||| || |||||| || | ||| | ||||| || |||||||| Sbjct 978 TTATAGGATAATTCAGGTCCAAG-ATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1743 TTGAATGGGCTTGCCGTACTTGGTGTTGCTTTGCCAATCCCGTTGGGCCCCCATGAATTC 1802 ||||| || || |||||||| | |||| ||||||| || || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1803 CTTAAAGTGCTT------TAGATAGTGGGGGTCAACATCATCGATGACGTTATACCATGC 1856 | | | ||||| || ||| | || |||||||||||||||||||||||||| Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1857 GTCATTTGAGTAGATCTTGGGGCTCAAGTC--TAGATGCCCACAAAGGTAATTATGTGGG 1914 ||||||||||| | |||| | || || || || |||| | ||| || |||||| Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGG 742 Query 1915 CCTAGTGATCTGGCCCACATTGTCTTCCCAGTTCT 1949 |||| ||| | ||||| ||| ||||| |||| Sbjct 741 CCTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 707 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 180/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 1702 CCAGGATTGCATAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAATGGGCTTGCCGTAC 1761 ||||||||||| || | ||| | ||||| || ||||||||||||| || || |||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1762 TTGGTGTTGCTTTGCCAATCCCGTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1815 || | ||| ||||||| || || || || | ||| | | | | |||| || Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1816 AGATAGTGGGGGTCAACATCATCGATGACGTTATACCATGCGTCATTTGAGTAGATCTTG 1875 | ||| | || || || |||||||||||||||||||| ||||||||||| | ||| Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 2101 Query 1876 GGGCTCAAGTC--TAGATGCCCACAAAGGTAATTATGTGGGCCTAGTGATCTGGCCCACA 1933 | | || || || || |||| | ||| || |||||||||| ||| | ||||| Sbjct 2100 GAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1934 TTGTCTTCCCAGTTCT 1949 ||| ||||| |||| Sbjct 2042 CTGTTTTCCCTATTCT 2027 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 155/227 (68%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1702 CCAGGATTGCATAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAATGGGCTTGCCGTAC 1761 ||||||||||| || | ||| | |||| || | ||||||||||| || || |||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1762 TTGGTGTTGCTTTGCCAATCCCGTTGGGCCCCCATGAATTCCTTAAAGTGCTT------T 1815 || | ||| ||||| | || || || || | ||| | | | | ||||| | Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1816 AGATAGTGGGGGTCAACATCATCGATGACGTTATACCATGCGTCATTTGAGTAGATCTTG 1875 | ||| | || | ||||||||||||||||||||||| ||||||||||| | ||| Sbjct 247 AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 188 Query 1876 GGGCTCAAGTCTAGATGCCCACAAAGGTAATTATGTGGGCCTAGTGA 1922 | | || || | | || | ||| || |||||||||| ||| Sbjct 187 GAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq953 Length=224861 Score = 84.2 bits (92), Expect = 4e-13 Identities = 174/256 (68%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 1702 CCAGGATTGCATAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAATGGGCTTGCCGTAC 1761 ||||||||||| | | ||| | ||||| || |||||||||||||| | || |||||| Sbjct 1843 CCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTAC 1902 Query 1762 TTGGTGTTGCTTTGCCAATCCCGTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1815 || | ||| ||||||| || || | || | ||| | | | | | || || Sbjct 1903 TTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAATT 1962 Query 1816 AGATAGTGGGGGTCAACATCATCGATGACGTTATACCATGCGTCATTTGAGTAGATCTTG 1875 | ||| | || || || ||||| |||||||||||||| ||||||||||| | || Sbjct 1963 AAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTTTTC 2022 Query 1876 GGGCTCAAGTC--TAGATGCCCACAAAGGTAATTATGTGGGCCTAGTGATCTGGCCCACA 1933 | | || || || || | || | ||| || |||||||||| ||| | ||||| Sbjct 2023 GAATTAAAATCCATAAAT-CTCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2080 Query 1934 TTGTCTTCCCAGTTCT 1949 ||| ||||| |||| Sbjct 2081 CTGTTTTCCCTATTCT 2096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8708509478760