Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007211.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq3283 118 2e-23 seq3439 105 1e-19 seq5745 93.3 7e-16 seq33 89.7 9e-15 seq30129 87.8 3e-14 seq953 86.0 1e-13 seq35612 84.2 4e-13 seq6801 82.4 1e-12 seq54129 80.6 5e-12 seq22495 80.6 5e-12 seq4104 80.6 5e-12 seq3059 80.6 5e-12 seq1993 80.6 5e-12 seq77518 77.0 6e-11 seq442 77.0 6e-11 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 225/324 (69%), Gaps = 12/324 (4%) Strand=Plus/Minus Query 1665 CTCCTCATCAAGGAACTCTTTATAGGAG-GATGTTGGACCAGGATTGCAGAGGAAGATTG 1723 |||| ||| | |||| ||||||||| ||| || ||||||||||| || | ||| Sbjct 2317 CTCCAAATCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATAC 2259 Query 1724 TTGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAATCCC 1783 |||| |||||||||||||||||||| || |||||||| |||| ||||| |||||||| | Sbjct 2258 TTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTC 2199 Query 1784 TTTGGGCCCCCATGAATTCCTTGA-AATGTT------TTACATAGTGAGGATCAACATCG 1836 || || || | ||| | |||| |||| | ||| ||| | ||| || ||| Sbjct 2198 GCTGTGCGCCTACGAACT-GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCG 2140 Query 1837 TCTATTATGTTATACCAGGCTTCGTTGCTGTAAACCCTAGGACTAAGGTCAATATGACCG 1896 || || | ||||||||| || || || ||| | | | ||| || ||| || Sbjct 2139 TCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCC 2080 Query 1897 CATAAGTAATTATGTGGACCTAATGATCTAGCCCACATGGTTTTCCC-AGTCCTGCTGTC 1955 || ||| || ||||| |||||||| | |||||| |||||||| | || || || Sbjct 2079 ATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATG-G 2021 Query 1956 ACCTTCTATAACTATACTTATTGG 1979 ||||| |||| || || || || Sbjct 2020 GCCTTCAATAATAATGCTCATGGG 1997 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 220/323 (68%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 1665 CTCCTCATCAAGGAACTCTTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATTGT 1724 |||| ||| | |||| ||||||||| || || ||| ||||||| || | ||| | Sbjct 997 CTCCAAATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACT 938 Query 1725 TGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAATCCCT 1784 ||| |||||||||||||||||||| || || ||||| |||| |||| ||||||| | Sbjct 937 TGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCG 878 Query 1785 TTGGGCCCCCATGAATTCCTTGA-AATGTT------TTACATAGTGAGGATCAACATCGT 1837 || || || | ||| | |||| |||| | ||| ||| | ||| ||||| | Sbjct 877 CTGTGCGCCTACGAACT-GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCAT 819 Query 1838 CTATTATGTTATACCAGGCTTCGTTGCTGTAAACCCTAGGACTAAGGTCAATATGACCGC 1897 | || | ||||||||| || || || ||| | | | ||| || ||| || Sbjct 818 CGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCA 759 Query 1898 ATAAGTAATTATGTGGACCTAATGATCTAGCCCACATGGTTTTCCC-AGTCCTGCTGTCA 1956 || ||| || ||||| |||||||| | |||||| |||||||| | || || || Sbjct 758 TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATG-GG 700 Query 1957 CCTTCTATAACTATACTTATTGG 1979 ||||| |||| || || || || Sbjct 699 CCTTCAATAATAATGCTCATGGG 677 >seq5745 Length=45059 Score = 93.3 bits (102), Expect = 7e-16 Identities = 112/149 (75%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 1671 ATCAAGGAACTCTTTATAGGAGGATGTTGGACC---AGGATTGCAGAGGAAGATTGTTGG 1727 ||| | |||| ||||||| || | |||||| ||||||||| | | ||| ||| Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1728 GATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAATCCCTTTG 1787 ||||| |||||||||||||| || || ||||| |||| ||| |||||||||| | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1788 GGCCCCCATGAATTCCTTGA-AATGTTTT 1815 || || ||||| | |||| |||||||| Sbjct 43627 TGCTCCTATGAACT-GTTGATAATGTTTT 43654 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 189/279 (68%), Gaps = 10/279 (4%) Strand=Plus/Minus Query 1671 ATCAAGGAACTCTTTATAGGAGGATGTTGGACC--AGGATTGCAGAGGAAGATTGTTGGG 1728 ||| | |||| ||||||| || | |||||| ||||||||| || | ||| ||| Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1729 ATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAATCCCTTTGG 1788 ||||||| |||||||||||| || || ||||| |||| ||| |||||||| | | || Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGT 403216 Query 1789 GCCCCCATGAATTCCTTGA-AATGTT------TTACATAGTGAGGATCAACATCGTCTAT 1841 | || | ||| | |||| |||| | ||| ||| ||| || || || || Sbjct 403215 ACGCCTACGAACT-GTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAAT 403157 Query 1842 TATGTTATACCAGGCTTCGTTGCTGTAAACCCTAGGACTAAGGTCAATATGACCGCATAA 1901 | ||||||||| || ||||| ||| || | | | | || ||| || || Sbjct 403156 GACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTAT 403097 Query 1902 GTAATTATGTGGACCTAATGATCTAGCCCACATGGTTTT 1940 ||||||||||||||| || || | ||||| | ||||| Sbjct 403096 GTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1665 CTCCTCATCAAGGAACTCTTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATTGT 1724 |||| ||| | |||| ||| ||||| | || ||||||||||| || | ||| | Sbjct 2337 CTCCAAATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACT 2396 Query 1725 TGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAAT 1780 ||| |||||||||||||||||||| | || ||||| |||| ||||| |||||||| Sbjct 2397 TGGAATCCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAAT 2452 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 207/306 (68%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 1683 TTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATTGTTGGGATCCCGCCTTTAAT 1742 ||||||||| | || ||||||||||| | | ||| |||| |||||||||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1743 TTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAATCCCTTTGGGCCCCCATGAATTC 1802 ||||| | || ||||| |||| |||| |||||||| | || | || | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACT- 1942 Query 1803 CTTGA-AATGTT------TTACATAGTGAGGATCAACATCGTCTATTATGTTATACCAGG 1855 |||| ||| | ||| ||| | ||| || ||||| || | ||||||||| | Sbjct 1943 GTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATG 2002 Query 1856 CTTCGTTGCTGTAAACCCTAGGACTAAGGTCAATATGACCGCA-TAAGTAATTATGTGGA 1914 | || || ||| | | | ||| || ||| | | || || ||| || ||||| Sbjct 2003 CATCATTTGAGTACGTTTTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTGGG 2061 Query 1915 CCTAATGATCTAGCCCACATGGTTTTCCC-AGTCCTGCTGTCACCTTCTATAACTATACT 1973 |||||||| | |||||| |||||||| | || || ||| ||||| |||| || || Sbjct 2062 CCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGT-GCCTTCAATAATAATGCT 2120 Query 1974 TATTGG 1979 || || Sbjct 2121 CATGGG 2126 >seq35612 Length=1588 Score = 84.2 bits (92), Expect = 4e-13 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1665 CTCCTCATCAAGGAACTCTTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATTGT 1724 |||| ||| | ||| ||||||||| | || ||||||||||| || | ||| | Sbjct 1473 CTCCAAATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACT 1532 Query 1725 TGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAAT 1780 ||| || ||||||||||||||||| || || ||||| |||| |||| |||||||| Sbjct 1533 TGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCAAT 1588 >seq6801 Length=49729 Score = 82.4 bits (90), Expect = 1e-12 Identities = 84/109 (77%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 1671 ATCAAGGAACTCTTTATAGGAGGATGTTGGACC---AGGATTGCAGAGGAAGATTGTTGG 1727 ||| | |||| |||||||||| | |||||| |||| |||| || | ||| ||| Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1728 GATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGC 1776 |||||||||||||||||||| || || ||||| |||| ||| |||||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGC 47168 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 114/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1699 GGACCAGGATTGCAGAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACGGGCTTCCCG 1758 || ||||||||||| || | ||| |||| ||||||||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1759 TATTTTGTATTGGACTGCCAATCCCTTTGGGCCCCCATGAATTCCTTGAAATGTT----- 1813 || |||| ||||| ||| || | || || || | ||| | | | |||| | Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1814 -TTACATAGTGAGGATCAACATCGTCTATTATGTTATACCA 1853 ||| ||| | ||| |||||||| || | ||||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq22495 Length=567 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1665 CTCCTCATCAAGGAACTCTTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATTGT 1724 |||| ||| | ||| ||||||||| | || ||||||||||| || | ||| | Sbjct 404 CTCCAAATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACT 345 Query 1725 TGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCA 1778 | | ||||||| |||||||||||| || || ||||| |||| ||||| |||||| Sbjct 344 TAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCA 291 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1665 CTCCTCATCAAGGAACTCTTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATTGT 1724 |||| ||| | |||| ||||||||| | || ||||||||||| || | ||| | Sbjct 20864 CTCCAAATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACT 20805 Query 1725 TGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTAT 1768 ||| |||||||||||||||||||| || || ||||| |||| || Sbjct 20804 TGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq3059 Length=182465 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1665 CTCCTCATCAAGGAACTCTTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATTGT 1724 |||| ||| | |||| ||||| ||| | || ||||||||||| || | ||| | Sbjct 20453 CTCCAAATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACT 20394 Query 1725 TGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCA 1778 ||| ||||||||||||||||||| || || ||||| |||| ||||| || ||| Sbjct 20393 TGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCA 20340 >seq1993 Length=81530 Score = 80.6 bits (88), Expect = 5e-12 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 1702 CCAGGATTGCAGAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTAT 1761 ||||||||||| || | ||| ||| |||||| ||||||||||||| || || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1762 TTTGTATTGGACTGCCAAT 1780 |||| ||| |||||||||| Sbjct 74343 TTTGCATTTGACTGCCAAT 74325 >seq77518 Length=14724 Score = 77.0 bits (84), Expect = 6e-11 Identities = 140/202 (69%), Gaps = 11/202 (5%) Strand=Plus/Minus Query 1671 ATCAAGGAACTCTTTATAGGAGGATGTTGGACC---AGGATTGCAGAGGAAGATTGTTGG 1727 ||| | ||| ||||||| || | |||||| ||||||||| || | ||| ||| Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1728 GATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAATCCCTTTG 1787 |||||||||||||||||||| | || |||| |||| ||| ||||| || | | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1788 GGCCCCCATGAATTCCTTGA-AATGTT------TTACATAGTGAGGATCAACATCGTCTA 1840 || || | ||| | |||| |||| | ||| ||| ||| ||||| || | Sbjct 2314 TGCTCCTACGAACT-GTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAA 2256 Query 1841 TTATGTTATACCAGGCTTCGTT 1862 | | ||||||||| || ||||| Sbjct 2255 TGACGTTATACCACGCGTCGTT 2234 >seq442 Length=237535 Score = 77.0 bits (84), Expect = 6e-11 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1683 TTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATTGTTGGGATCCCGCCTTTAAT 1742 ||||||||| | | || ||||||||||| || ||| |||| ||| |||||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1743 TTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAATCCCTTTGGGCCCCCATGAA 1799 |||||| | || ||||| |||| ||||| |||| | | | ||| || || | ||| Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAA 22878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8666949044390