Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007290.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq3283 104 4e-19 seq77518 100 5e-18 seq5745 100 5e-18 seq3439 100 5e-18 seq33 100 5e-18 seq1993 95.1 2e-16 seq22495 91.5 3e-15 seq54129 80.6 5e-12 seq35612 77.0 6e-11 seq490 77.0 6e-11 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1682 GGACCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1741 || || |||||||| || | ||| | || ||||||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1742 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1796 ||||||| |||| ||||| | | || || || | ||||| | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1797 -TGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAGGCGTCGTTATTGTAGACC 1855 | | ||| |||| |||||| || |||||||||||||| || || || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1856 TTGGGACTCAGGTCCAGATGTCCGCATAAATAGTTATGTGGTCCCAGTGATCTGGCCCA 1914 |||| | | | |||| | ||| || ||||| ||||| || | ||| | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq77518 Length=14724 Score = 100 bits (110), Expect = 5e-18 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1685 CCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 || |||||||| || | ||| || |||||||||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1745 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGC---TTGAGG 1801 |||| || || || |||| | ||| || || | ||||| | | | ||| || | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1802 AAAT--GC-GGATCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1845 |||| || ||| ||| |||||||||||||||||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 100 bits (110), Expect = 5e-18 Identities = 125/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1685 CCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 || |||||||| | | ||| || ||||| ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1745 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGCTTGAGG 1801 |||| || || ||||| | | ||| || || ||||||| | ||| | | || | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1802 AAAT--GC-GGATCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1845 |||| || ||| || ||||||||||||||||||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1689 GATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTG 1748 ||||||| || | ||| | || ||||||||||||||||||||||| || |||||||||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1749 TGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT------TGAGGA 1802 ||||| ||||| | | || || || | ||||| | | | |||| | | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1803 AATGCGGATCGACGTCATCAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTGGGAC 1862 ||| |||| ||| ||||| |||||||||||||| || || || ||| |||| | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1863 TCAGGTCCAGATGTCCGCATAAATAGTTATGTGGTCCCAGTGATCTGGCCCA 1914 | | |||| | ||| || ||||| ||||| || | ||| | ||||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 125/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1685 CCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 || |||||||| || | ||| || ||||||| ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1745 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGCTTGAGG 1801 |||| || || ||||||| | || | || | ||||| | ||| | | || | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1802 AAAT--GC-GGATCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1845 |||| || ||| |||||||||||||||||||||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1685 CCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 || |||||||| || | ||| || |||||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1745 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGCTTGAGG 1801 |||| || || ||||| | | ||| || | | ||||| | ||| | | || | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1802 AAAT--GC-GGATCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1845 |||| || ||| |||||||||||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1682 GGACCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1741 || || |||||||| || | ||| | | ||||||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1742 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1796 ||||||| |||| ||||||| | || || || | ||||| | | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1797 -TGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAGGCGTCGTT 1845 | | ||| |||| || |||||| |||||||||||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1682 GGACCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1741 || || |||||||| || | ||| | || ||||||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1742 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGCTTG 1798 ||||||| |||| || |||| || || || | ||||| | ||| | | ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1799 AGGA---AATGCGGATCGACGTCATCAATGACGTTATACCA 1836 | | ||| |||| ||| || || |||||||||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1682 GGACCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1741 || || |||||||| || | ||| | || || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1742 TACTTTGTGTTGGATTGCCA 1761 ||||||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq490 Length=137872 Score = 77.0 bits (84), Expect = 6e-11 Identities = 113/156 (72%), Gaps = 12/156 (8%) Strand=Plus/Minus Query 1690 ATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGT 1749 |||||| |||| |||| ||||| || ||||||||||| | |||||| | || |||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1750 GTTGGATTGCCAGTCCCTTTG---GGCCCCCATGAACTCCTTAAAGTGCTT----GAG-G 1801 | | ||||||| || || |||||| || | |||| | | ||||| || | Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1802 AAATGC-GGATCGACGTCATCAATGACGTTATACCA 1836 | |||| ||| ||||||||| |||||||||||||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCA 70466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8686130783330