Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007339.1 Length=2736 Score E Sequences producing significant alignments: (Bits) Value seq3439 105 1e-19 seq33 82.4 1e-12 seq20728 77.0 6e-11 seq5745 77.0 6e-11 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 177/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1671 GGTCCTTTATTGCAGAGGAAGATGGTGGGAATCCCACCTTTAATCATGACTGGCTTTCCG 1730 ||||| |||||| || | ||| | |||||||| |||||||| ||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1731 TACTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCT----- 1785 ||||| | |||| ||||| | || || || || | ||| | || | |||||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1786 -TTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACCAAGCATCATTATTGTATAC- 1843 ||| ||| | ||| || ||||| |||||||| ||||| ||||||| ||| ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCAT--TTGAGTACG 786 Query 1844 TCTCGGGCTT-AGATCTAGATGGCCGCACAAGTAATTGTGTGGTCCTAACGAACGCGCCC 1902 | | || || | ||| | | || | ||| |||||||| ||||| ||||| |||| Sbjct 785 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 726 Query 1903 ACGCTGTTTTGCC 1915 | |||||||| || Sbjct 725 ATGCTGTTTTCCC 713 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 162/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 1679 ATTGCAGAGGAAGATGGTGGGAATCCCACCTTTAATCATGACTGGCTTTCCGTACTTCGT 1738 |||||| || | ||| |||||||| | |||||| ||||| ||||||||||| | Sbjct 403297 ATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGC 403238 Query 1739 GTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTT------AGATA 1792 || ||||||| | || | || | ||| | || | |||| ||| | ||| Sbjct 403237 ATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATA 403178 Query 1793 GTGGGGATCAACGTCATCAATGACGTTGTACCAAGCATCATTATTGTATACTCTCGGGCT 1852 ||| ||||||||||||||||| ||||| || || || |||| ||||| | Sbjct 403177 AGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATT 403118 Query 1853 TAGATCTAGATGGCCGCACAAGTAATTGTGTGGTCCTAACGAACGCGCCCACGCTGTTTT 1912 | ||| | | ||| | |||||| ||||| || |||||||| ||||| ||||||| Sbjct 403117 CAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq20728 Length=3653 Score = 77.0 bits (84), Expect = 6e-11 Identities = 152/224 (68%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 1698 GGAATCCCACCTTTAATCATGACTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCTCTT 1757 |||||||| |||||||| | ||| ||||||||||| | ||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1758 TGGGCCCCCATGAATTCTTTAAAATGCT------TTAGATAGTGGGGATCAACGTCATCA 1811 || || || | ||| | || | |||||| ||| ||| | ||| |||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1812 ATGACGTTGTACCAAGCATCATTATTGTATACTCTCGGGCTTAGATCTAGATGGCCGCAC 1871 |||||||| || || |||||||| ||| | ||| | | ||||| | | Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCTCATT 1620 Query 1872 AAGTAATTGTGTGGTCCTAACGAACGCGCCCACGCTGTTTTGCC 1915 | ||| |||||||| |||| ||||| ||||| |||||||| || Sbjct 1621 ATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCC 1664 >seq5745 Length=45059 Score = 77.0 bits (84), Expect = 6e-11 Identities = 151/224 (67%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 1698 GGAATCCCACCTTTAATCATGACTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCTCTT 1757 ||||||||||||||||| ||||| || |||||||| | || ||||| | | | Sbjct 43565 GGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCAT 43624 Query 1758 TGGGCCCCCATGAATTCTTTAAAATGCT------TTAGATAGTGGGGATCAACGTCATCA 1811 || || || ||||| | || | |||| | ||| ||| ||| | ||||||| Sbjct 43625 TGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCA 43684 Query 1812 ATGACGTTGTACCAAGCATCATTATTGTATACTCTCGGGCTTAGATCTAGATGGCCGCAC 1871 |||||||| ||||| || || || ||| | ||| | | ||| | | ||| Sbjct 43685 ATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATT 43744 Query 1872 AAGTAATTGTGTGGTCCTAACGAACGCGCCCACGCTGTTTTGCC 1915 | ||||| ||||| || |||||||| ||||| ||||||| || Sbjct 43745 ATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8638176435980