Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007638.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq3283 109 1e-20 seq22495 98.7 2e-17 seq3439 98.7 2e-17 seq5745 93.3 7e-16 seq33 93.3 7e-16 seq4104 89.7 9e-15 seq4295 86.0 1e-13 seq54129 82.4 1e-12 seq77518 80.6 5e-12 seq6801 80.6 5e-12 seq953 80.6 5e-12 seq30129 78.8 2e-11 seq35612 77.0 6e-11 seq3059 77.0 6e-11 >seq3283 Length=49157 Score = 109 bits (120), Expect = 1e-20 Identities = 227/332 (68%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 1616 GCATTTTTTAAAGCCCACGTCTTTAAAGCGGAATTCTTTTCCTCGTCCAGGTACTCTTTA 1675 ||||||| || || ||| || || || ||||| ||| |||| | || |||| Sbjct 2355 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTA 2296 Query 1676 TAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGA 1735 ||| || || || ||||||||||| | ||| |||| |||||||||||||||||| Sbjct 2295 TAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGA 2236 Query 1736 ACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTTTA 1795 ||||| || |||||||| | |||| ||||| | | ||| || || | |||| || | Sbjct 2235 ACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGA 2176 Query 1796 AAGTGTT------TGAGAAAATGGGGATCAACGTCATCGATGACGTTGTACCATGCGTCG 1849 | || | | | | ||| ||| ||||| ||||||||||| |||||||| || Sbjct 2175 TAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCA 2116 Query 1850 TTGCTGTACACCTTTGGGCTT-AGGTC--TAGATGCCCACACAAGTAATTATGTGGACCT 1906 || |||| ||||| || | || || || |||| | ||| || ||||| ||| Sbjct 2115 TTTGAGTAC-GTTTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCT 2059 Query 1907 AATGACCTGGCCCACATCGTCTTCCCTGTTCT 1938 ||||| | ||||| || |||||| |||| Sbjct 2058 AATGAACGAGCCCATGCTGTTTTCCCTATTCT 2027 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1672 TTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAAT 1731 ||||||| ||| || || ||||||||||| | ||| || | ||||||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1732 TTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTC 1791 ||||||||| || |||||||| | |||| ||||||| | ||| || || | |||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1792 TTTAAAGTGTT------TGAGAAAATGGGGATCAACGTCATCGATGACGTTGTACCATGC 1845 || | | || | | | | ||| ||| | ||||||||||||||| |||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1846 GTCGTT 1851 || || Sbjct 206 ATCATT 201 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 177/253 (70%), Gaps = 12/253 (5%) Strand=Plus/Minus Query 1695 GATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTGG 1754 |||||||||| | ||| |||| ||||||||||||||||||||||| || |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1755 TATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTTTAAAGTGTT------TGAGAA 1808 ||| ||||| | | ||| || || | |||| || | | || | | | | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1809 AATGGGGATCAACGTCATCGATGACGTTGTACCATGCGTCGTTGCTGTACACCTTTGGGC 1868 ||| ||| || |||||||||||||| |||||||| || || |||| ||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTAC-GTTTTGGAA 778 Query 1869 TT-AGGTC--TAGATGCCCACACAAGTAATTATGTGGACCTAATGACCTGGCCCACATCG 1925 || | || || || |||| | ||| || ||||| |||||||| | ||||| | Sbjct 777 TTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTG 720 Query 1926 TCTTCCCTGTTCT 1938 | |||||| |||| Sbjct 719 TTTTCCCTATTCT 707 >seq5745 Length=45059 Score = 93.3 bits (102), Expect = 7e-16 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 1690 CCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTA 1749 ||| |||||||||| | ||| ||| ||||| ||||||||||||||||| |||||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1750 CTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTTTAAAGTGTT------T 1803 ||| | ||| ||||| | | || || || || |||| || | | |||| | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1804 GAGAAAATGGGGATCAACGTCATCGATGACGTTGTACCATGCGTCGTT 1851 | | || ||| | |||||| |||||||| |||||||||||||| Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 93.3 bits (102), Expect = 7e-16 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1690 CCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTA 1749 ||| ||||||||||| | ||| ||| ||||||| ||||||||||||||| || ||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1750 CTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTT--TAAAG-TGTTTGAG 1806 ||| | ||| ||||||| | ||| | || | |||| || ||| | | ||| | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1807 AAAAT---GGGGATCAACGTCATCGATGACGTTGTACCATGCGTCGTT 1851 |||| ||| |||||||| |||||||| ||||| |||||||| Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq4104 Length=64936 Score = 89.7 bits (98), Expect = 9e-15 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1616 GCATTTTTTAAAGCCCACGTCTTTAAAGCGGAATTCTTTTCCTCGTCCAGGTACTCTTTA 1675 ||||||| || || ||| || || || ||||| ||| |||| | || |||| Sbjct 20902 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTA 20843 Query 1676 TAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGA 1735 ||| ||| ||| || ||||||||||| | ||| |||| |||||||||||||||||| Sbjct 20842 TAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGA 20783 Query 1736 ACTGGCTTGCCGTACTT 1752 ||||| || |||||||| Sbjct 20782 ACTGGTTTTCCGTACTT 20766 >seq4295 Length=67413 Score = 86.0 bits (94), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1690 CCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTA 1749 || ||||||| | || | |||| |||||| || |||||||||||| |||| || ||||| Sbjct 46847 CCTTGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTA 46788 Query 1750 CTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTTT---AAAGTGTTTGAG 1806 ||||| ||| | ||| | ||||||| | || | |||||| | | | ||| | Sbjct 46787 CTTGGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTG 46728 Query 1807 AAAATGGG---GATCAACGTCATCGATGACGTTGTACCATGC 1845 |||| || || |||||||| || |||||||||||||| Sbjct 46727 CAAATAGGATAGAGATACGTCATCTATAACGTTGTACCATGC 46686 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1688 GGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCG 1747 || || ||||||||||| | ||| |||| ||||||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1748 TACTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTT--TAAAG--TGTT- 1802 ||||| | |||| || |||| ||| || || | |||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1803 -TGAGAAAATGGGGATCAACGTCATCGATGACGTTGTACCATGCGTCGTT 1851 | | | ||| ||| || || ||||||||||| |||||| | || || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 167/245 (68%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 1616 GCATTTTTTAAAGCCCACGTCTTTAAAGCGGAATTCTTTTCCTCGTCCAGGTACTCTTTA 1675 ||||||| ||||| ||||| ||| || ||||| || |||| | | ||||| Sbjct 2478 GCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAATGCTTTA 2419 Query 1676 TAGCTGGAATTGGG---CCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATT 1732 || ||| || ||| ||||||||||| | ||| ||| ||||||||||||||| Sbjct 2418 TAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATT 2359 Query 1733 TGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCT 1792 ||||||| || ||||||| | ||| || |||| | || || || | |||| | Sbjct 2358 TGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGT 2299 Query 1793 T--TAAAG-TGTTTGAGAAAAT---GGGGATCAACGTCATCGATGACGTTGTACCATGCG 1846 | ||| | | ||| | |||| ||| || ||||| |||||||| ||||| ||| Sbjct 2298 TGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCG 2239 Query 1847 TCGTT 1851 ||||| Sbjct 2238 TCGTT 2234 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1661 TCCAGGTACTCTTTATAGCTGGAATTGGG--CCCT-GGATTGCAAAGGAAGATTGTTGGG 1717 |||| | || |||||||| ||| || |||| ||| ||||||| | ||| ||| Sbjct 47061 TCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGGA 47120 Query 1718 ATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCCCTCTGG 1777 ||||||||||||||||||||||| ||||||||||| | ||| ||| ||| | ||| Sbjct 47121 ATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGTTGCGCTGT 47180 Query 1778 GCCCCCATAAACTCTTTAAAGTGTT------TGAGAAAATGGGGATCAACGTCATCGATG 1831 | | ||||| || | | |||| | | | || ||| |||||||| ||| Sbjct 47181 ATGCATACAAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAAGGACGTCATCAATG 47240 Query 1832 ACGTTGTACCATGCGTCGTT 1851 | || ||||| |||||||| Sbjct 47241 ATATTATACCACGCGTCGTT 47260 >seq953 Length=224861 Score = 80.6 bits (88), Expect = 5e-12 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 1672 TTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAAT 1731 ||||||| ||| || || |||||||||| | ||| |||| |||||||||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1732 TTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTC 1791 ||||| || || |||||||| | |||| ||||| | | ||| | || | |||| Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1792 TT--TAA-AGTGTT---TGAGAAAATGGGGATCAACGTCATCGATGACGTTGTACCATGC 1845 || ||| | | || | | | ||| ||| ||||| ||||| ||||| |||||||| Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1846 GTCGTT 1851 || || Sbjct 2004 ATCATT 2009 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1688 GGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCG 1747 || || ||||||||||| | ||| |||| ||||||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1748 TACTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTT 1793 ||||| | |||| ||||| | | ||| || || | |||| || Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1616 GCATTTTTTAAAGCCCACGTCTTTAAAGCGGAATTCTTTTCCTCGTCCAGGTACTCTTTA 1675 ||||||| || || ||| || || || ||||| ||| |||| | | |||| Sbjct 1435 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAATGTTTTA 1494 Query 1676 TAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGA 1735 ||| ||| || || ||||||||||| | ||| |||| || ||||||||||||||| Sbjct 1495 TAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGA 1554 Query 1736 ACTGGCTTGCCGTACTT 1752 ||||| || |||||||| Sbjct 1555 ACTGGTTTTCCGTACTT 1571 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 123/177 (69%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1617 CATTTTTTAAAGCCCACGTCTTTAAAGCGGAATTCTTTTCCTCGTCCAGGTACTCTTTAT 1676 |||||| || || ||| || || || ||||| ||| |||| | || ||||| Sbjct 20490 CATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTAT 20431 Query 1677 AGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAA 1736 | ||| || || ||||||||||| | ||| |||| ||||||||||||||||||| Sbjct 20430 CGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAA 20371 Query 1737 CTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTT 1793 ||| || ||||| || | |||| | ||||| | ||| || || | |||| || Sbjct 20370 TTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTT 20314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8705312522270