Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007723.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq5745 109 1e-20 seq3283 102 1e-18 seq33 100 5e-18 seq77518 96.9 6e-17 seq22495 96.9 6e-17 seq3439 93.3 7e-16 seq1993 93.3 7e-16 seq4104 91.5 3e-15 seq6801 86.0 1e-13 seq3059 84.2 4e-13 seq35612 82.4 1e-12 seq30129 82.4 1e-12 seq442 82.4 1e-12 seq54129 78.8 2e-11 >seq5745 Length=45059 Score = 109 bits (120), Expect = 1e-20 Identities = 145/201 (72%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGCGGG 1719 ||| |||||| ||||||| ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1720 AATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTG 1779 ||| |||||||||||||||||||| || ||||| |||| |||||| ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1780 GGCCCCCATGAATTCTTTAAAGTGTT------TTAGATAATGAGGATCAACGTCATCAAT 1833 || || ||||| | || | | |||| ||| |||| ||| | ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1834 GACGTTGTACCAGGCGTCATT 1854 |||||| ||||| ||||| || Sbjct 43687 GACGTTATACCATGCGTCGTT 43707 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 |||||||||| ||||||| || ||||| |||||||| || | |||| ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1723 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 || ||||||||||||||||| || ||||| |||| ||| | ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1783 CCCCATGAATTCTTTAAAGTGTT------TTAGATAATGAGGATCAACGTCATCAATGAC 1836 || | ||| | || | | || | ||| ||||| ||| ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1837 GTTGTACCAGGCGTCATT 1854 ||| ||||| || ||||| Sbjct 2131 GTTATACCATGCATCATT 2114 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1694 CCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1753 || |||||||| || | |||| ||||| || | ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1754 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTT------TT 1807 |||| |||||| ||||||| | || | || | ||| | || | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1808 AGATAATGAGGATCAACGTCATCAATGACGTTGTACCAGGCGTCATT 1854 | |||| ||| ||||||||||||||||| ||||| ||||| || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 142/201 (71%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGCGGG 1719 ||||||||| ||||||| ||| || || |||||||| || | |||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1720 AATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTG 1779 ||| || |||||||||||||||| ||| |||| |||| |||||| || |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1780 GGCCCCCATGAATTCTTTAAAGTGTT------TTAGATAATGAGGATCAACGTCATCAAT 1833 || || | ||| | || | | || | ||| |||| ||| || |||||||| Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAAT 2255 Query 1834 GACGTTGTACCAGGCGTCATT 1854 |||||| ||||| ||||| || Sbjct 2254 GACGTTATACCACGCGTCGTT 2234 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 ||| ||||| ||||||| ||| ||||| |||||||| || | |||| |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1723 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 || | ||||||||||||||| |||||||| |||| ||| | ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1783 CCCCATGAATTCTTTAAAGTGTT------TTAGATAATGAGGATCAACGTCATCAATGAC 1836 || | ||| | || | | || | ||| ||||| ||| | |||||| ||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1837 GTTGTACCAGGCGTCATT 1854 ||| ||||| || ||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 139/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 ||| |||||| ||||||| | | ||||| ||||||| || | |||| ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1723 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 || ||||||||||||||||| |||||||| |||| || | ||||| | | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1783 CCCCATGAATTCTTTAAAGTGTT------TTAGATAATGAGGATCAACGTCATCAATGAC 1836 || | ||| | || | | || | ||| ||||| ||| || ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1837 GTTGTACCAGGCGTCATT 1854 ||| ||||| || ||||| Sbjct 811 GTTATACCATGCATCATT 794 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 118/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1694 CCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1753 || |||||||| || | |||| ||||| || |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1754 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTT------TT 1807 |||| |||||| ||||| | | ||| || | | ||| | || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1808 AGATAATGAGGATCAACGTCATCAATGACGTTGTACCAGGCGT 1850 | |||| ||| ||||||||||||||||| ||||| |||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGT 74241 >seq4104 Length=64936 Score = 91.5 bits (100), Expect = 3e-15 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 |||||||||| ||||||| ||| |||||| |||||||| || | |||| ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1723 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTAT 1760 || ||||||||||||||||| |||||||| |||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq6801 Length=49729 Score = 86.0 bits (94), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 13/203 (6%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGCGGG 1719 |||||||||| |||||||| ||| || || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1720 AATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGT--CCCTT 1777 ||| || ||||||||||||||||| || ||||| |||| |||||| ||| ||| | || Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGTTGCGCTG 47179 Query 1778 TGGGCCCCCATGAATTCTTTAAAGTGTT------TTAGATAATGAGGATCAACGTCATCA 1831 | || || || | || | | |||| ||| |||| ||| ||||||||| Sbjct 47180 TATGCATACA--AACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAAGGACGTCATCA 47237 Query 1832 ATGACGTTGTACCAGGCGTCATT 1854 |||| || ||||| ||||| || Sbjct 47238 ATGATATTATACCACGCGTCGTT 47260 >seq3059 Length=182465 Score = 84.2 bits (92), Expect = 4e-13 Identities = 125/178 (70%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 |||||||||| ||||| | ||| ||||| |||||||| || | |||| ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1723 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 || ||||||||||||| ||| |||||||| |||| ||| | | ||||| | || || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGC 20328 Query 1783 CCCCATGAATTCTTTAAAGTGTT------TTAGATAATGAGGATCAACGTCATCAATG 1834 || | ||| | || | | || | ||| ||||| ||| ||||| |||||| Sbjct 20327 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 ||||||||| ||||||| ||| ||||| |||||||| || | |||| ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1723 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCA 1770 || ||||||||||||||||| |||||||| |||| || | ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 82.4 bits (90), Expect = 1e-12 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 |||||||||| ||| ||| ||| ||||| |||||||| || | |||| ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1723 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCA 1770 || ||||||||||||||| | |||||||| |||| ||| | ||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq442 Length=237535 Score = 82.4 bits (90), Expect = 1e-12 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1663 ATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1722 ||||||||| ||||||| |||| ||||| |||||||| || |||| ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1723 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGC 1782 | |||||||||||||||| |||||||| |||| ||| | ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1783 CCCCATGAATTCTTTAAAGTGTTTT 1807 || | ||| | || | | || ||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1691 GGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCG 1750 ||||| |||||||| || | |||| ||||| || ||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1751 TATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAG--TGTT- 1805 || |||| ||| | || |||| || || || | ||| | || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1806 -TTAGATAATGAGGATCAACGTCATCAATGACGTTGTACCAGGCGTCATT 1854 ||| ||||| ||| || || || |||||||| ||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718100348230