Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007724.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq5745 114 2e-22 seq3283 113 8e-22 seq77518 104 4e-19 seq33 100 5e-18 seq22495 98.7 2e-17 seq1993 95.1 2e-16 seq6801 93.3 7e-16 seq3439 93.3 7e-16 seq54129 87.8 3e-14 seq442 78.8 2e-11 seq4104 77.0 6e-11 >seq5745 Length=45059 Score = 114 bits (126), Expect = 2e-22 Identities = 196/281 (70%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 1656 TCCAAGTACTCTTTATAGCTGGAATTTGGACCT---GGATTGCAGAGGAAGATTGTGGGT 1712 || ||| || ||||||| ||| |||||| |||||||| | | ||| || Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1713 ATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCAGTCCCTTTGG 1772 ||||| ||||||||||||||||| || |||||||| | ||||||| |||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1773 GCCCCCATGAACTCTT--TGAAGTGCTTTAGGTA---ATGC-GGATCTACGTCATCAATG 1826 || || ||||||| || | | || |||| || | || ||| | |||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1827 ACGTTATACCATGCGTCGTTGCTGTAGATCTTTGGGCTGAGATCTAGATGTCCACATAAA 1886 |||||||||||||||||||| || | || | | | ||| | | || || | Sbjct 43688 ACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATA 43747 Query 1887 TAATTATGTGGTCCTAATGACCTGGCCCACATTGTCTTTCC 1927 ||||||||||| || || || | ||||| | ||| || || Sbjct 43748 TAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 193/279 (69%), Gaps = 7/279 (3%) Strand=Plus/Minus Query 1656 TCCAAGTACTCTTTATAGCTGGAATTTGGACCTGGATTGCAGAGGAAGATTGTGGGTATC 1715 |||||| || ||||||| || || || |||||||| || | ||| | || ||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1716 CCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCAGTCCCTTTGGGCC 1775 |||||||||||||||||||| ||||||||||| | ||| | | |||| | | || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1776 CCCATGAACTCTTTGAAGTGCT------TTAGGTAATGCGGATCTACGTCATCAATGACG 1829 || | ||||| || | |||| ||| |||| |||| ||||| || |||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1830 TTATACCATGCGTCGTTGCTGTAGATCTTTGGGCTGAGATCTAGATGTCCACATAAATAA 1889 ||||||||||| || || ||| | || | | | ||| | | ||| || || Sbjct 2130 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAG 2071 Query 1890 TTATGTGGTCCTAATGACCTGGCCCACATTGTCTTTCCC 1928 || ||||| |||||||| | ||||| ||| |||||| Sbjct 2070 TTGTGTGGGCCTAATGAACGAGCCCATGCTGT-TTTCCC 2033 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 143/200 (72%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 1656 TCCAAGTACTCTTTATAGCTGGAATTTGGACCT---GGATTGCAGAGGAAGATTGTGGGT 1712 |||||| | ||||||| ||| |||||| |||||||| || | ||| || Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1713 ATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCAGTCCCTTTGG 1772 |||||||||||||||||||||| || ||||||| | ||||||| | |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1773 GCCCCCATGAACTCTTTGAAGTGCT------TTAGGTAATGCGGATCTACGTCATCAATG 1826 || || | ||||| || | |||| ||| ||| ||| || ||||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1827 ACGTTATACCATGCGTCGTT 1846 ||||||||||| |||||||| Sbjct 2253 ACGTTATACCACGCGTCGTT 2234 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1656 TCCAAGTACTCTTTATAGCTGGAATTTGGACCT--GGATTGCAGAGGAAGATTGTGGGTA 1713 || ||| || ||||||| | | |||||| |||||||| || | ||| || | Sbjct 403334 TCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAA 403275 Query 1714 TCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCAGTCCCTTTGGG 1773 |||||| ||||||||||||||| || |||||||| | ||||||| |||||| | || Sbjct 403274 TCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTA 403215 Query 1774 CCCCCATGAACTCTTTGAAGTGCT------TTAGGTAATGCGGATCTACGTCATCAATGA 1827 | || | ||||| || | || | ||| ||| ||| ||||||||||||| Sbjct 403214 CGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGA 403155 Query 1828 CGTTATACCATGCGTCGTT 1846 |||||||||| |||||||| Sbjct 403154 CGTTATACCACGCGTCGTT 403136 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1667 TTTATAGCTGGAATTTGGACCTGGATTGCAGAGGAAGATTGTGGGTATCCCGCCTTTAAT 1726 ||||||| ||| || || |||||||| || | ||| | | ||||||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1727 TTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCAGTCCCTTTGGGCCCCCATGAACTC 1786 ||||||||| || |||||||| | ||| | | |||||| | || || || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1787 TTTGAAGTGCT------TTAGGTAATGCGGATCTACGTCATCAATGACGTTATACCATGC 1840 || | |||| ||| |||| |||| | |||||| ||||||||||||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1841 GTCGTT 1846 || || Sbjct 206 ATCATT 201 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1686 CCTGGATTGCAGAGGAAGATTGTGGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1745 || |||||||| || | ||| || |||||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1746 TTGGTATTTGACGGCCAGTCCCTTTGGGCCCCCATGAACTCTTTGAAGTGCT------TT 1799 || | ||||||| |||| | | ||| || | | ||||| || | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1800 AGGTAATGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTT 1846 | ||| ||| ||||||||||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq6801 Length=49729 Score = 93.3 bits (102), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 13/202 (6%) Strand=Plus/Plus Query 1656 TCCAAGTACTCTTTATAGCTGGAATTTGGACCT---GGATTGCAGAGGAAGATTGTGGGT 1712 |||||| || |||||||| ||| |||||| ||| |||| || | ||| || Sbjct 47061 TCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGGA 47120 Query 1713 ATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCAGT--CCCTTT 1770 ||||||||||||||||||||||| || |||||||| | ||||||| || ||| | || | Sbjct 47121 ATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGTTGCGCTGT 47180 Query 1771 GGGCCCCCATGAACTCTT--TGAAGTGCTTTAGGTA---ATGC-GGATCTACGTCATCAA 1824 || || |||| || | | || |||| || | || ||| |||||||||| Sbjct 47181 ATGCATACA--AACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAAGGACGTCATCAA 47238 Query 1825 TGACGTTATACCATGCGTCGTT 1846 ||| |||||||| |||||||| Sbjct 47239 TGATATTATACCACGCGTCGTT 47260 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 168/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 1690 GATTGCAGAGGAAGATTGTGGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGG 1749 ||||||| || | ||| | || ||||||||||||||||||||||| || |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1750 TATTTGACGGCCAGTCCCTTTGGGCCCCCATGAACTCTTTGAAGTGCT------TTAGGT 1803 || | |||| | | || || || | ||||| || | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1804 AATGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTGCTGTAGATCTTTGGGC 1863 ||| |||| || ||||| ||||||||||||||||| || || ||| | || | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1864 TGAGATCTAGATGTCCACATAAATAATTATGTGGTCCTAATGACCTGGCCCACATTGTCT 1923 | | ||| | | ||| || || || ||||| |||||||| | ||||| ||| | Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGT-T 718 Query 1924 TTCCC 1928 ||||| Sbjct 717 TTCCC 713 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1683 GGACCTGGATTGCAGAGGAAGATTGTGGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1742 || || |||||||| || | ||| | || ||||||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1743 TACTTGGTATTTGACGGCCAGTCCCTTTGGGCCCCCATGAACTCTTTGAAGTGCT----- 1797 ||||| | ||| | | | |||| || || || | ||||| || | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1798 -TTAGGTAATGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTT 1846 ||| |||| |||| || || || ||||||||||||||| | || || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq442 Length=237535 Score = 78.8 bits (86), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 1656 TCCAAGTACTCTTTATAGCTGGAATTTGGACCTGGATTGCAGAGGAAGATTGTGGGTATC 1715 |||||| | ||||||| |||| || || |||||||| || ||| | || ||| Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1716 CCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCAGTCCCTTTGGGCC 1775 |||||||||||||||||| || |||||||| | ||| | | || ||| | ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1776 CCCATGAACTCTTTGAAGTGCT------TTAGGTAATGCGGATCTACGTCATCAATGACG 1829 || | ||||| || | |||| ||| |||| || | ||||| || || ||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACG 22929 Query 1830 TTATACCATGCGTCGTT 1846 ||||||| ||| || || Sbjct 22930 TTATACC-TGCATCATT 22945 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1656 TCCAAGTACTCTTTATAGCTGGAATTTGGACCTGGATTGCAGAGGAAGATTGTGGGTATC 1715 |||||| || ||||||| ||| || || |||||||| || | ||| | || ||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1716 CCGCCTTTAATTTGAACTGGCTTCCCGTACTT 1747 |||||||||||||||||||| || |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8666949044390