Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007730.2 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq3439 113 8e-22 seq3283 104 4e-19 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 189/270 (70%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 1661 TTTATAGGATGATGTTGGCCCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTTTAAT 1720 |||||||||| || || || ||||||| || | ||| |||||||||| |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1721 TTGAATGGGTTTTCCGTATTTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAAATTC 1780 ||||| ||||||||||| || | |||| ||||| | | || || || | || | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1781 TTTATAGTGTT------TTAGGTAGTGGGGGTCAACATCGTCAATGACGTTATACCACGC 1834 || ||| || | ||| || | || ||||| || |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1835 GTCATTGCTGTATAC-TTTCGGGCTT-AGGTCCAGGTGACCACATAGGTAGTTGTGTGGG 1892 ||||| || ||| ||| || || | |||| || || ||||||||||||| Sbjct 799 ATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGG 742 Query 1893 CCTAGTGAACGAGCCCACATTGTCTTTCCT 1922 |||| |||||||||||| ||| || ||| Sbjct 741 CCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 189/271 (70%), Gaps = 12/271 (4%) Strand=Plus/Minus Query 1661 TTTATAGGAT-GATGTTGGCCCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTTTAA 1719 |||||||||| ||| || || |||||||| || | ||| |||||||||| ||||||| Sbjct 2299 TTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAA 2241 Query 1720 TTTGAATGGGTTTTCCGTATTTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAAATT 1779 |||||| ||||| ||||| || | ||| ||||| | | || || || | || | Sbjct 2240 TTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT 2181 Query 1780 CTTTATAGTGTT------TTAGGTAGTGGGGGTCAACATCGTCAATGACGTTATACCACG 1833 || ||| || | ||| || | || || ||||| |||||||||||||| | Sbjct 2180 GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATG 2121 Query 1834 CGTCATTGCTGTATAC-TTTCGGGCTT-AGGTCCAGGTGACCACATAGGTAGTTGTGTGG 1891 | ||||| || ||| ||| || || | |||| || || |||||||||||| Sbjct 2120 CATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGG 2063 Query 1892 GCCTAGTGAACGAGCCCACATTGTCTTTCCT 1922 ||||| |||||||||||| ||| || ||| Sbjct 2062 GCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8666949044390