Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_007965.1 Length=2557 Score E Sequences producing significant alignments: (Bits) Value seq33 129 9e-27 seq5745 114 2e-22 seq77518 98.7 2e-17 seq3283 95.1 2e-16 seq54129 91.5 2e-15 seq22495 89.7 8e-15 seq1993 89.7 8e-15 seq1010 87.8 3e-14 seq490 87.8 3e-14 seq3439 82.4 1e-12 >seq33 Length=454124 Score = 129 bits (142), Expect = 9e-27 Identities = 270/393 (69%), Gaps = 17/393 (4%) Strand=Plus/Minus Query 1392 TAGAGGGGGGAGTTGAGGAAGATGAATTTTGCATTGTGGATCGTCCACGCTCTGAGAGAT 1451 || || |||| || || |||| ||||| |||||| || | ||||||| | | | | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1452 GCGTTTTCATCTTTATCGAGGAAGTCTTTATAGCTAGCCCCCTCT-----CCTGGATTGC 1506 | ||| |||| |||||| ||| ||||||| || | |||| || ||||||| Sbjct 403349 GAATTTGAATCTATATCGAAGAACGCTTTATA---AGACAACTCTGGACCCCAGGATTGC 403293 Query 1507 ACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTA-TTTACAGTTG 1565 | |||||||| | || || || | |||| |||||||||| || ||||| ||| || ||| Sbjct 403292 AAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTG 403233 Query 1566 GACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTT--AATTTCAAATAAT 1623 ||||||||| || | |||| || | || |||| ||| |||| |||||| Sbjct 403232 -ACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT--AAATAAG 403176 Query 1624 TAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGACTCTGCCATT-A 1682 || | |||||||||||||||||| |||| ||||| || ||| ||| | Sbjct 403175 CTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCA 403116 Query 1683 AAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCACATTGTTTTT 1742 || || | | ||| || | ||||||||| ||| || ||||| ||||| | ||||||| Sbjct 403115 AATCCATAAAGCCCATTATG-TAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTT 403057 Query 1743 CCAGTTCGACTATCTCCTTCGATGATGATACTT 1775 || ||| | | |||||| || || || ||| Sbjct 403056 -CAATTCTAGAAGGTCCTTCAATAATAATGCTT 403025 >seq5745 Length=45059 Score = 114 bits (126), Expect = 2e-22 Identities = 247/363 (68%), Gaps = 15/363 (4%) Strand=Plus/Plus Query 1391 ATAGAGGGGGGAGTTGAGGAAGATGAATTTTGCATTGTGGATCGTCCACGCTCTGAGAGA 1450 |||||| |||| || || |||| |||| ||||| || | ||| ||| | | | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1451 TGCGTTTTCATCTTTATCGAGGAAGTCTTTATA-GCTA-----GCCCCCTCTCCTGGATT 1504 || ||| |||| |||| | ||| ||||||| | || | ||| || ||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCC---CCAGGATT 43548 Query 1505 GCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTA-TTTACAGT 1563 ||| | |||||| | || || || |||||| |||||||||| || ||||| ||| || | Sbjct 43549 GCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATT 43608 Query 1564 TGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTT--AATTTCAAATA 1621 || ||||||| | ||| || ||||| || | || |||| ||| |||| ||||| Sbjct 43609 TG-ACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT--AAATA 43665 Query 1622 ATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGACTCTGCCATT 1681 | || |||||||||||||||||||| |||| ||||| || | | ||| Sbjct 43666 AGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATT 43725 Query 1682 AAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCACATTGTTTT 1741 || || | | || | | |||||||||| ||| || ||||| ||||| | |||||| Sbjct 43726 CAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 43785 Query 1742 TCC 1744 || Sbjct 43786 ACC 43788 >seq77518 Length=14724 Score = 98.7 bits (108), Expect = 2e-17 Identities = 260/390 (67%), Gaps = 18/390 (5%) Strand=Plus/Minus Query 1391 ATAGAGGGGGGAGTTGAGGAAGATGAATTTTGCATTGTGGATCGTCCACGCTCTGAGAGA 1450 |||||| ||| || || |||| ||||| |||||| || | ||||||| | | | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1451 TGCGTTTTCATCTTTATCGAGGAAGTCTTTATA-GCTA-----GCCCCCTCTCCTGGATT 1504 || ||| |||| ||| | ||| ||||||| | || | ||| || ||||| Sbjct 2449 TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCC---CCAGGATT 2393 Query 1505 GCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTA-TTTACAGT 1563 ||| || ||||| | || || || |||||| ||||||||| || |||| ||| || | Sbjct 2392 GCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATT 2333 Query 1564 TGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTT--AATTTCAAATA 1621 || |||| |||| ||| || |||| || | || |||||||| |||| ||||| Sbjct 2332 TG-ACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT--AAATA 2276 Query 1622 ATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGACTCTGCCATT 1681 | || | ||||||||||||||||| |||| ||||| || | | ||| Sbjct 2275 AGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATT 2216 Query 1682 AAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCACATTGTTTT 1741 || || | | || | | |||||||||| ||| || |||| ||||| | |||||| Sbjct 2215 CAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTT 2156 Query 1742 TCCAGTTCGACTATCTCCTTCGATGATGAT 1771 || || ||| |||||| || || || Sbjct 2155 ACCGATT---CTAGGTCCTTCAATAATAAT 2129 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 175/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1496 TCCTGGATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTA 1555 ||| |||||||| || ||||| || || || |||||| |||||||||| |||||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1556 -TTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTT--TAA 1612 ||| || |||| |||||| | || || |||| || | || ||||||| ||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1613 TTTCAAATAATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGAC 1672 || |||||||| || | ||| || ||||||||||| | ||||| || || Sbjct 2162 TT--AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGT 2105 Query 1673 TCTGCCATTAAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCA 1732 | || |||||| || | | ||| | | || || ||| ||||||||||| ||||| Sbjct 2104 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 Query 1733 CATTGTTTTTCC 1744 |||||| || Sbjct 2044 TGCTGTTTTCCC 2033 >seq54129 Length=2260 Score = 91.5 bits (100), Expect = 2e-15 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1496 TCCTGGATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTA 1555 ||| |||||||| || ||||| || || || |||||| |||||| ||| || ||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1556 -TTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTT--TAA 1612 ||| || |||| ||| |||| | || || |||| || | || ||||||| ||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1613 TTTCAAATAATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGAC 1672 || |||||||| || | || || ||||||||||| || ||||| || || Sbjct 2139 TT--AAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGT 2082 Query 1673 TCTGCCATTAAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCA 1732 | || |||||| | | | ||| | | || || |||| | ||||||||| ||||| Sbjct 2081 TTTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 Query 1733 CATTGTTTTTCC 1744 ||||||||| Sbjct 2021 TGCTGTTTTTCC 2010 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 1496 TCCTGGATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTA 1555 ||| |||||||| || ||||| | || || | |||| |||||||||| || ||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1556 -TTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTT--TAA 1612 ||| || |||| |||||||| || || |||| || | || |||||||| ||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1613 TTTCAAATAATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGAC 1672 || |||||||| || |||||||| ||||||||||| | ||||| || || Sbjct 249 TT--AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGT 192 Query 1673 TCTGCCATTAAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACG 1726 | || |||||| || | | ||| | | || || ||| ||||||||||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACG 138 >seq1993 Length=81530 Score = 89.7 bits (98), Expect = 8e-15 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 1494 TCTCCTGGATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCG 1553 || || |||||||| |||||||| | || || || ||||| |||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1554 TA-TTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTT-- 1610 || ||| || ||| ||||||| | ||| || | || || | || |||| ||| Sbjct 74346 TACTTTGCATTTG-ACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1611 AATTTCAAATAATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAG 1670 |||| |||||| || | |||||||||||||||||| ||| ||||| || Sbjct 74287 AATT--AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1671 ACTCTGCCATTAAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCC 1730 | | ||| || || | | || | | |||||||||| ||| || ||||| | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1731 CACATTGTTTTTCCAGTTCGACTATCTCCTTCGATGATGAT 1771 || | |||||| || ||| | | |||||| || || || Sbjct 74169 CAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT 74129 >seq1010 Length=204159 Score = 87.8 bits (96), Expect = 3e-14 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 1497 CCTGGATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTAT 1556 ||| ||||||| |||||||| | | |||| |||||| || |||||| || ||||| Sbjct 40918 CCTAGATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTAC 40859 Query 1557 TTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTTAATTT- 1615 ||| || || ||||| | | ||| ||| || | ||||||||||| ||| ||| Sbjct 40858 TTAGCATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTTTTTTG 40799 Query 1616 CAAATA-ATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATA-GACT 1673 |||||| ||| | | |||||| || || ||||| | | ||||||| | || | Sbjct 40798 CAAATAGGATAGAG-ACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATT 40740 Query 1674 CTGCCATTAAAGTC-AAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCA 1732 || |||||| || | || | ||| || | || |||||| ||||| || || |||| Sbjct 40739 TTG-AATTAAAATCTATGAAGCCCATTATG-TAGTTATGTGGGCCTAAAGATCGTTCCCA 40682 Query 1733 CATTGTTTTTCCAGTTC 1749 ||||| |||||| ||| Sbjct 40681 TATTGTCTTTCCAATTC 40665 >seq490 Length=137872 Score = 87.8 bits (96), Expect = 3e-14 Identities = 188/276 (68%), Gaps = 15/276 (5%) Strand=Plus/Minus Query 1385 GCTTTGATAGAGGGGGGAGTTGAGGAAGATGAATTTTGCATTGTGGATCGTCCACGCTCT 1444 |||| ||||| ||||| |||| ||| ||||| |||||| ||||||||| |||| Sbjct 70738 GCTTCTATAGAAGGGGGTGTTGGCGAAATAGAATTCTGCATTTGCAATCGTCCACTCTCT 70679 Query 1445 GAGAGATGCGTTTTCATCTTTATCGAGGAAGTCTTTATAGC--TAGCCCC--CTCTCCTG 1500 | | | || || ||| ||||| | ||| |||||| ||||| ||||| | Sbjct 70678 TATATACGCATTAACATTCTTATCCAAGAATGATTTATAAGAGTAGCCTGTACTCTCATT 70619 Query 1501 GATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTATTTAC 1560 |||||| || || ||||| |||||||| |||||| |||| | |||||| | ||||| Sbjct 70618 -ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTG 70560 Query 1561 AGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTTAATTTCAAAT 1620 | | | |||||| | | |||||| || | || |||||||||| || || | Sbjct 70559 AATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTC--TTCCAGAG 70502 Query 1621 AATT-----AGGGCTTATGTCATCAATGACGTTATA 1651 | | |||| | |||||| ||||||||||| Sbjct 70501 AGATGCTGGAGGG---ACGTCATCTATGACGTTATA 70469 >seq3439 Length=62978 Score = 82.4 bits (90), Expect = 1e-12 Identities = 167/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 1501 GATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTATTTAC 1560 ||||||| || ||||| || || || |||||| |||||||||| || ||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1561 AGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTT--TAATTTCAA 1618 ||||| ||||| | || || |||| || | || ||||||| ||||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT--AA 839 Query 1619 ATAATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGACTCTGCC 1678 |||||| || | ||||| ||||||||||| | ||||| || || | || Sbjct 838 ATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGA 779 Query 1679 ATTAAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCACATTGT 1738 |||||| || | | ||| | | || || ||| ||||||||||| ||||| ||| Sbjct 778 ATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGT 719 Query 1739 TTTTCC 1744 ||| || Sbjct 718 TTTCCC 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8065921224270