Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008236.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq3283 105 1e-19 seq3439 100 5e-18 seq22495 91.5 3e-15 seq490 84.2 4e-13 seq54129 82.4 1e-12 seq953 82.4 1e-12 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1688 GGTCCTGGATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCA 1747 ||||| ||||||||||| | ||| |||| || || ||||||||||||| ||| ||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1748 TACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1802 ||||||| ||| ||||| | ||| || || || | ||| | | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1803 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1851 ||| ||| | ||| ||||| || |||||||| |||||||||||||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1688 GGTCCTGGATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCA 1747 ||||| |||||||||| | ||| |||| || || ||||||||||||| ||| || || Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1748 TACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1802 ||||||| |||| ||||| | ||| || || || | ||| | | | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1803 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1851 ||| ||| | ||| || ||||| |||||||| |||||||||||||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1688 GGTCCTGGATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCA 1747 ||||| ||||||||||| | ||| || | || || | ||||||||||| ||| || || Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1748 TACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1802 ||||||| ||| ||||||| || || || || | ||| | | | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1803 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1851 ||| ||| | ||| | |||||| |||||||| |||||||||||||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq490 Length=137872 Score = 84.2 bits (92), Expect = 4e-13 Identities = 118/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1696 ATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCATACTTTGT 1755 |||||| |||| |||| ||| ||||||||||||||||| |||||||| |||| |||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1756 GTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCTT----TAGATAG- 1810 | ||||||| | | |||||| || | ||| | | ||||| ||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1811 TGC-GGGTCTACGTCATCAATGACGTTGTACCATGCATCATTG 1852 ||| || |||||||| |||||||| ||||||| |||||| Sbjct 70498 TGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTG 70456 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1688 GGTCCTGGATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCA 1747 ||||| ||||||||||| | ||| |||| || || ||||||||||||||||| || || Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1748 TACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1802 ||||||| ||| || |||| | || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1803 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1851 ||| ||| | ||| || || || |||||||| |||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 1688 GGTCCTGGATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCA 1747 ||||| |||||||||| | ||| |||| || || |||||||||||||||| || || Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1748 TACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1802 ||||||| ||| ||||| | ||| || | || | ||| | | | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1803 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1851 ||| ||| | ||| ||||| || || ||||| |||||||||||||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8737037442675