Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008267.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq3283 107 3e-20 seq3439 105 1e-19 seq22495 102 1e-18 seq54129 98.7 2e-17 seq953 98.7 2e-17 seq20728 91.5 3e-15 seq815 89.7 9e-15 seq5745 86.0 1e-13 seq33 77.0 6e-11 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 129/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1718 GGTCCAGCATTACATAAAAAGATGGTCGGTATCCCGCCTTTAATTTGAATGGGTCTACCA 1777 ||||||| ||| || | | ||| | || ||||||||||||||||||| ||| | || Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1778 TACTTTGTATTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAGTGCTT---- 1833 ||||||| |||| ||||| | ||| || || | |||| || | | ||||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1834 --TAGGTAATGCGGATCGACGTCATCAATGACGTTATACCATGCGTCATTTGAGTA 1887 || |||| |||| |||||| || ||||||||||||||||| ||||||||||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA 2108 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1691 TCTAAAAACTCTTTATATGAAGATGTGGGTCCAGCATTACATAAAAAGATGGTCGGTATC 1750 ||||| ||| |||||| || || |||||| ||| || | | ||| | || ||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1751 CCGCCTTTAATTTGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTCCATCTGGGCC 1810 |||||||||||||||| ||| | || ||||||| ||| ||||| | ||| || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1811 CCCATAAACTCTTTAAAGTGCTT------TAGGTAATGCGGATCGACGTCATCAATGACG 1864 || | |||| || | | ||||| || |||| |||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1865 TTATACCATGCGTCATTTGAGTA 1887 ||||||||||| ||||||||||| Sbjct 810 TTATACCATGCATCATTTGAGTA 788 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1718 GGTCCAGCATTACATAAAAAGATGGTCGGTATCCCGCCTTTAATTTGAATGGGTCTACCA 1777 ||||||| ||| || | | ||| | | ||||||| ||||||||||| ||| | || Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1778 TACTTTGTATTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAGTGCTT---- 1833 ||||||| |||| ||||||| ||| || || | |||| || | | ||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1834 --TAGGTAATGCGGATCGACGTCATCAATGACGTTATACCATGCGTCATTTGAGTA 1887 || |||| |||| || |||||| ||||||||||||||||| ||||||||||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA 195 >seq54129 Length=2260 Score = 98.7 bits (108), Expect = 2e-17 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1718 GGTCCAGCATTACATAAAAAGATGGTCGGTATCCCGCCTTTAATTTGAATGGGTCTACCA 1777 ||||||| ||| || | | ||| | || |||||||||||||||||||| ||| | || Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1778 TACTTTGTATTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAGTGCT----- 1832 ||||||| |||| || |||| ||| || || | |||| || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1833 -TTAGGTAATGCGGATCGACGTCATCAATGACGTTATACCATGCGTCATTTGAGTA 1887 ||| |||| |||| ||| || || ||||||||||||||| | ||||||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq953 Length=224861 Score = 98.7 bits (108), Expect = 2e-17 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 1718 GGTCCAGCATTACATAAAAAGATGGTCGGTATCCCGCCTTTAATTTGAATGGGTCTACCA 1777 ||||||| ||| || || | ||| | || |||||||||||||||||||| | | | || Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1778 TACTTTGTATTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAGTGCT----- 1832 ||||||| |||| ||||| | ||| | || | |||| || | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1833 -TTAGGTAATGCGGATCGACGTCATCAATGACGTTATACCATGCGTCATTTGAGTA 1887 ||| |||| |||| |||||| || || |||||||||||||| ||||||||||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTA 2015 >seq20728 Length=3653 Score = 91.5 bits (100), Expect = 3e-15 Identities = 110/149 (74%), Gaps = 7/149 (5%) Strand=Plus/Plus Query 1745 GGTATCCCGCCTTTAATTTGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTCCATC 1804 || ||||| ||||||||||||| ||| | || ||||||| |||| |||| | | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCCGTTGCG-C 1500 Query 1805 TGGGCCCCCATAAACTCTTTAAAGTGCTTT------AGGTAATGCGGATCGACGTCATCA 1858 || || || | |||| || | | |||||| | |||| |||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1859 ATGACGTTATACCATGCGTCATTTGAGTA 1887 ||||||||||| ||||| ||||||||||| Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTA 1589 >seq815 Length=151552 Score = 89.7 bits (98), Expect = 9e-15 Identities = 125/176 (71%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1718 GGTCCAGCATTACATAAAAAGATGGTCGGTATCCCGCCTTTAATTTGAATGGGTCTACCA 1777 ||||||| ||| || | | || | || |||||||||||||||||| |||| | | Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1778 TACTTTGTATTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAGTGCTT---- 1833 ||||||| |||| | ||||| ||| || || | |||| || | | | ||| Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1834 --TAGGTAATGCGGATCGACGTCATCAATGACGTTATACCATGCGTCATTTGAGTA 1887 || |||| | || |||||| || ||||||||||||||||| ||||||||||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA 85249 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 148/207 (71%), Gaps = 11/207 (5%) Strand=Plus/Plus Query 1691 TCTAAAAACTCTTTATATGA-AGATGTGGGTCC--AGCATTACATAAAAAGATGGTCGGT 1747 ||||| ||| ||||||| || | || ||| || || ||| || | | ||| || Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1748 ATCCCGCCTTTAATTTGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTC-CATCTG 1806 ||||| ||||||||||||| ||| | || ||||||| ||| ||||| | ||| || Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCAT-TG 43626 Query 1807 GGCCCCCATAAACTCTT--TAAAGTGCTTTAGGTAAT---GC-GGATCGACGTCATCAAT 1860 || || || |||| || ||| || |||| ||| || ||| || ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1861 GACGTTATACCATGCGTCATTTGAGTA 1887 |||||||||||||||||| || || || Sbjct 43687 GACGTTATACCATGCGTCGTTCGATTA 43713 >seq33 Length=454124 Score = 77.0 bits (84), Expect = 6e-11 Identities = 106/149 (71%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 1745 GGTATCCCGCCTTTAATTTGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTCCATC 1804 || ||||||| ||||||||||| ||| | || ||||||| ||| ||||||| | Sbjct 403278 GGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCAC 403219 Query 1805 TGGGCCCCCATAAACTCTTTAAAGTGCTTT------AGGTAATGCGGATCGACGTCATCA 1858 || | || | |||| || | | || ||| | ||| ||| |||||||||| Sbjct 403218 TGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCA 403159 Query 1859 ATGACGTTATACCATGCGTCATTTGAGTA 1887 |||||||||||||| ||||| || ||||| Sbjct 403158 ATGACGTTATACCACGCGTCGTTCGAGTA 403130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8721297304720