Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008283.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq3439 102 1e-18 seq3283 102 1e-18 seq22495 98.7 2e-17 seq3059 89.7 9e-15 seq33 89.7 9e-15 seq54129 87.8 3e-14 seq5745 86.0 1e-13 seq1993 82.4 1e-12 seq77518 80.6 5e-12 seq30129 80.6 5e-12 seq953 80.6 5e-12 seq35612 78.8 2e-11 seq490 77.0 6e-11 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 1688 AGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCC 1747 ||| ||| ||||||| || | |||| | ||||| |||||||||||||||| ||| || || Sbjct 964 AGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 905 Query 1748 GTATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCT---- 1803 ||| |||| |||| ||||| || | ||| || || | |||| || | | |||| Sbjct 904 GTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTT 845 Query 1804 --TTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATT 1852 ||| ||| | || ||| ||||| |||||||| ||||| || ||||| Sbjct 844 AATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 1688 AGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCC 1747 ||| ||||||||||| || | |||| | ||||| |||||||||||||||| ||| || || Sbjct 2284 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCC 2225 Query 1748 GTATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCT---- 1803 ||| |||| ||| ||||| || | ||| || || | |||| || | | |||| Sbjct 2224 GTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTT 2165 Query 1804 --TTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATT 1852 ||| ||| | || |||||| || |||||||| ||||| || ||||| Sbjct 2164 AATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 1688 AGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCC 1747 ||| ||||||||||| || | |||| | |||| |||| ||||||||||| ||| || || Sbjct 371 AGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCC 312 Query 1748 GTATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCT---- 1803 ||| |||| ||| |||||||| | ||| || || | |||| || | | |||| Sbjct 311 GTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTT 252 Query 1804 --TTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATT 1852 ||| ||| | || || |||||| |||||||| ||||| || ||||| Sbjct 251 AATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq3059 Length=182465 Score = 89.7 bits (98), Expect = 9e-15 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1688 AGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCC 1747 ||| ||||||||||| || | |||| | ||||| |||||||||||||||||||| || || Sbjct 20420 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCC 20361 Query 1748 GTATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCTT 1804 ||| |||| ||| | |||||| | ||| || || | |||| || | | ||||| Sbjct 20360 GTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 136/191 (71%), Gaps = 12/191 (6%) Strand=Plus/Minus Query 1672 CTTTATATGACGAGGTAGGACC--AGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTT 1729 ||||||| ||| | ||||| ||||||||| || | |||| ||||| |||| ||| Sbjct 403324 CTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTT 403265 Query 1730 AATTTGAATTGGCTTGCCGTATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAA 1789 |||||||| ||| || ||||| |||| || |||||||| | ||| | || | || Sbjct 403264 AATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAA 403205 Query 1790 CTCTTTAAAGTGCT------TTAGATA--GTGGGGGTCGACGTCATCAATGACGTTGTAC 1841 || || | | || | ||| ||| ||| || |||||||||||||||||| ||| Sbjct 403204 CTGTTGATAATGATTTTTAATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATAC 403147 Query 1842 CAGGCGTCATT 1852 || ||||| || Sbjct 403146 CACGCGTCGTT 403136 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1689 GGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCCG 1748 || ||||||||||| || | |||| | ||||| |||||||||||||||||||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1749 TATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCT----- 1803 || |||| ||| || ||||| ||| || || | |||| || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1804 -TTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATT 1852 ||| ||| | || ||| || || |||||||| ||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 170/250 (68%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 1692 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCCGTAT 1751 ||||||||||| | | |||| ||||| || ||||||||||||| ||| |||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1752 TTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTT--TAAAGTGCTTTAGAT 1809 |||| || ||||| || | || || || || |||| || ||| || |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1810 A------GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATTGTTGTATACCT 1863 | ||| || || ||||||||||||||| ||||| ||||| || ||| | Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 1864 TGGGGCTCAAGTCTAGATGTCCACAGAGATAATTATGGAGGCCCAATGATCTAGCCCACA 1923 | | |||| || | | || | ||||||||| | ||||| || | ||||| | Sbjct 43719 TCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAA 43778 Query 1924 TTGTTTTGCC 1933 |||||| || Sbjct 43779 CTGTTTTACC 43788 >seq1993 Length=81530 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/165 (72%), Gaps = 10/165 (6%) Strand=Plus/Minus Query 1692 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCCGTAT 1751 ||||||||||| || | |||| ||||| ||| |||||||||||| ||| |||||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1752 TTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCT------TT 1805 |||| || ||||| || | || || | | |||| || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1806 AGATA--GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGT 1848 | ||| ||| || |||||||||||||||||| ||||| |||| Sbjct 74283 AAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGT 74241 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 120/169 (71%), Gaps = 10/169 (6%) Strand=Plus/Minus Query 1692 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCCGTAT 1751 ||||||||||| || | |||| ||||| |||||||||||||||| || || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1752 TTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCT------TT 1805 |||| || || ||||| | || || || | |||| || | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1806 AGATA--GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATT 1852 | ||| ||| || ||| |||||||||||||| ||||| ||||| || Sbjct 2280 AAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq30129 Length=3650 Score = 80.6 bits (88), Expect = 5e-12 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1688 AGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCC 1747 ||| ||||||||||| || | |||| | ||||| |||||||||||||||| | | || || Sbjct 2370 AGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCC 2429 Query 1748 GTATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCTT 1804 ||| |||| ||| ||||| || | ||| || || | |||| || | | ||||| Sbjct 2430 GTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq953 Length=224861 Score = 80.6 bits (88), Expect = 5e-12 Identities = 120/171 (70%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 1688 AGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCC 1747 ||| ||||||||||| | | |||| | ||||| ||||||||||||||||||| || || Sbjct 1839 AGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCC 1898 Query 1748 GTATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCT---- 1803 ||| |||| ||| ||||| | | ||| | || | |||| || | | | || Sbjct 1899 GTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTT 1958 Query 1804 --TTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATT 1852 ||| ||| | || |||||| || || ||||| ||||| || ||||| Sbjct 1959 AATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT 2009 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1688 AGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCC 1747 ||| ||||||||||| || | |||| | ||||| |||||||||||||||| ||| || || Sbjct 1506 AGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCC 1565 Query 1748 GTATTTTGTGTTGCTTTGCCA 1768 ||| |||| |||| ||||| Sbjct 1566 GTACTTTGCGTTGGCCTGCCA 1586 >seq490 Length=137872 Score = 77.0 bits (84), Expect = 6e-11 Identities = 116/165 (70%), Gaps = 10/165 (6%) Strand=Plus/Minus Query 1697 ATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCCGTATTTTGT 1756 |||||| |||| || | || ||||| ||||||||||| |||||||| | ||||||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1757 GTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCTT--------TAGA 1808 | ||||||| | || |||||| |||| ||| | | ||||| ||| Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1809 TAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATTG 1853 | ||| || ||||||||| |||||||| ||||| | |||||| Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATGACTCATTG 70456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8682933826840