Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008299.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq3283 113 8e-22 seq77518 104 4e-19 seq22495 104 4e-19 seq4104 104 4e-19 seq3439 104 4e-19 seq33 104 4e-19 seq5745 100 5e-18 seq30129 96.9 6e-17 seq35612 95.1 2e-16 seq1993 95.1 2e-16 seq442 95.1 2e-16 seq3059 91.5 3e-15 seq80468 87.8 3e-14 seq54129 86.0 1e-13 seq815 82.4 1e-12 seq6801 80.6 5e-12 seq953 77.0 6e-11 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGC-TTGAGTTGGGTCCTGGATTGCAGAG 1706 ||||| |||| |||||| ||| ||||||| |||| | ||||| |||||||| || Sbjct 2325 GAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAG 2267 Query 1707 GAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTG 1766 | |||| | ||||| |||||||||||||||||||| || |||||||||| ||| | || Sbjct 2266 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTG 2207 Query 1767 CCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATC 1820 ||| | | || || || | ||| | || | | |||| ||| || | ||| Sbjct 2206 CCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGG 2147 Query 1821 GACGTCATCAATGACGTTGTACCAGGCCTCGTT 1853 |||||| || |||||||| ||||| || || || Sbjct 2146 GACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1752 || |||||||| || | |||| ||||| ||||||||||||||||||| ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1753 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1806 |||| |||||| || |||| | ||| || || | ||| | || | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1807 AGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1853 | || ||| ||| |||||||||||||| ||||| || ||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq22495 Length=567 Score = 104 bits (114), Expect = 4e-19 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGG 1707 ||||| |||| ||| || || ||||||| | | | ||||| |||||||| || Sbjct 412 GAATTGGACTCCAAATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGT 353 Query 1708 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGC 1767 | |||| | |||| |||| ||||||||||||||| ||||||||||||| ||| | ||| Sbjct 352 ACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGC 293 Query 1768 CAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCG 1821 |||| | || || || | ||| | || | | |||| ||| || | ||| | Sbjct 292 CAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGG 233 Query 1822 ACGTCATCAATGACGTTGTACCAGGCCTCGTT 1853 | |||||| |||||||| ||||| || || || Sbjct 232 ATGTCATCGATGACGTTATACCATGCATCATT 201 >seq4104 Length=64936 Score = 104 bits (114), Expect = 4e-19 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGG 1707 ||||| |||| |||||| ||| ||||||| | | | |||||| |||||||| || Sbjct 20872 GAATTGGACTCCAAATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGT 20813 Query 1708 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTAT 1759 | |||| | ||||| |||||||||||||||||||| ||||||||||||| || Sbjct 20812 ACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGG 1707 ||||| |||| ||| || ||| ||||||| | | | ||||| ||||||| || Sbjct 1005 GAATTGGACTCCAAATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGT 946 Query 1708 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGC 1767 | |||| | ||||| |||||||||||||||||||| ||||||||||||| || | ||| Sbjct 945 ACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGC 886 Query 1768 CAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCG 1821 || | | || || || | ||| | || | | |||| ||| || | ||| | Sbjct 885 CAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGG 826 Query 1822 ACGTCATCAATGACGTTGTACCAGGCCTCGTT 1853 || ||||| |||||||| ||||| || || || Sbjct 825 ACATCATCGATGACGTTATACCATGCATCATT 794 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1752 || |||||||| || | |||| ||||| |||| ||||||||||||||| ||||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1753 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1806 |||| |||||| ||||||| | || | || | ||| | || | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1807 AGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1853 | || ||| |||||||||||||||||| ||||| || ||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq5745 Length=45059 Score = 100 bits (110), Expect = 5e-18 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1752 || |||||||| | | |||| ||||| || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1753 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1806 |||| |||||| ||||| | | ||| || || ||||| | || | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1807 AGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1853 | || ||| || ||||||||||||||| ||||| || ||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq30129 Length=3650 Score = 96.9 bits (106), Expect = 6e-17 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGG 1707 ||||| |||| |||||| ||| ||| ||| | | | ||||| |||||||| || Sbjct 2329 GAATTGGACTCCAAATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGT 2388 Query 1708 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGC 1767 | |||| | ||||| |||||||||||||||||| | ||||||||||||| ||| | ||| Sbjct 2389 ACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGC 2448 Query 1768 CAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1805 || | | || || || | ||| | || | | ||||| Sbjct 2449 CAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq35612 Length=1588 Score = 95.1 bits (104), Expect = 2e-16 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGG 1707 ||||| |||| |||||| || ||||||| | | | ||||| |||||||| || Sbjct 1465 GAATTGGACTCCAAATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGT 1524 Query 1708 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGC 1767 | |||| | ||||| |||||||||||||||||||| ||||||||||||| || | ||| Sbjct 1525 ACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGC 1584 Query 1768 CA 1769 || Sbjct 1585 CA 1586 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1752 || |||||||| || | |||| ||||| ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1753 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1806 |||| |||||| ||||| | | ||| || | | ||| | || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1807 AGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1853 | || ||| |||||||||||||||||| ||||| || | ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq442 Length=237535 Score = 95.1 bits (104), Expect = 2e-16 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1662 ATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1721 |||||| || ||||||| | | || ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1722 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1781 |||||||||||||||||| ||||||||||||| ||| | ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1782 CCCCATGAATTCTTTAAAGTGCTTT 1806 || | ||| | || | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq3059 Length=182465 Score = 91.5 bits (100), Expect = 3e-15 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGG 1707 ||||| |||| |||||| ||| ||||| | | | | ||||| |||||||| || Sbjct 20461 GAATTGGACTCCAAATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGT 20402 Query 1708 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGC 1767 | |||| | ||||| |||||||||||||||| ||| |||||||| |||| ||| | | | Sbjct 20401 ACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTAC 20342 Query 1768 CAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1805 |||| | || || || | ||| | || | | ||||| Sbjct 20341 CAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 >seq80468 Length=4946 Score = 87.8 bits (96), Expect = 3e-14 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGG 1707 ||||| |||| || ||| || ||||||| | | | ||||| ||||||| || Sbjct 4224 GAATTGGACTCCATATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGT 4283 Query 1708 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATT 1760 | |||| | ||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 4284 ACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATT 4336 >seq54129 Length=2260 Score = 86.0 bits (94), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1690 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1749 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1750 TACTTTGTATTTGATTGCCAGT 1771 ||||||| ||| | || |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGT 2179 >seq815 Length=151552 Score = 82.4 bits (90), Expect = 1e-12 Identities = 146/212 (69%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 1648 gAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGG 1707 ||||| |||| || ||| ||| ||||||| | | | ||||| |||||||| || Sbjct 85465 GAATTTGACTCCAAATTCAATAACGTTTTATAGGATAA-TCAGGTCCAGGATTGCAAAGT 85407 Query 1708 AAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGC 1767 | ||| | ||||| ||||||||||||||| | || ||| ||||||||| ||| | | | Sbjct 85406 ACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTACTTTGCATTGGCCTTC 85347 Query 1768 CAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCG 1821 |||| | || || || | ||| | || | | | || ||| || | || | Sbjct 85346 CAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAATTAAATAATTCAGAGAG 85287 Query 1822 ACGTCATCAATGACGTTGTACCAGGCCTCGTT 1853 ||||| || |||||||| ||||| || || || Sbjct 85286 ACGTCGTCGATGACGTTATACCATGCATCATT 85255 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1662 ATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1718 |||||| ||| |||||||| | | || || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1719 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGT 1771 ||| |||||||||||||||||||| || |||||||||| |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq953 Length=224861 Score = 77.0 bits (84), Expect = 6e-11 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1674 TTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1733 ||||||| | | | ||||| |||||||| | | |||| | ||||| ||||||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1734 TTGAACTGGCTTTCCGTACTTTGTATT 1760 ||||| || ||||||||||||| ||| Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATT 1910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8711706435250