Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008304.1 Length=2613 Score E Sequences producing significant alignments: (Bits) Value seq33 109 9e-21 seq4295 107 3e-20 seq1010 95.1 2e-16 seq77518 91.5 2e-15 seq5745 91.5 2e-15 seq3439 91.5 2e-15 seq54129 86.0 1e-13 seq3283 86.0 1e-13 seq490 80.6 4e-12 >seq33 Length=454124 Score = 109 bits (120), Expect = 9e-21 Identities = 238/353 (67%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 1456 TAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCTCTCAGTGGT 1515 || || |||| || || |||| ||||| ||||| | ||| ||||| | | || | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1516 GCATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccT--CTCCTGGATTGCACA 1573 | |||| ||| | |||| ||| ||||||| ||| | | | || |||||||| | Sbjct 403349 GAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAA 403290 Query 1574 GCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA-TTTACAGTTGGAC 1632 ||||||| |||| || || | |||||||||||| || ||||| || ||| || || ||| Sbjct 403289 GCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCA-TTTGAC 403231 Query 1633 TGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGGA 1692 ||||||| || | || | || | | | || ||| |||| || ||| Sbjct 403230 TGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGA 403171 Query 1693 TTGACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGAAATCA 1752 ||| ||||| |||||||||||| | | | || |||||| || ||||| ||||| Sbjct 403170 GGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCC 403111 Query 1753 AGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTT 1805 | | || | | ||||||||||| || || | ||| ||||| | ||| || Sbjct 403110 ATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq4295 Length=67413 Score = 107 bits (118), Expect = 3e-20 Identities = 239/353 (68%), Gaps = 13/353 (4%) Strand=Plus/Minus Query 1461 GGGGGAGTTGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCTCTCAGTGGTGCATT 1520 ||||| || | ||||| ||||| |||||| ||||||||| ||| | | ||| Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAATGTCCATTTCTTCAAAGTTAAATT 46890 Query 1521 TTCCTCTTTCTCGAGGAAATCTTTATATGAccccccc--TCTCCT-GGATTGCACAGCAC 1577 | |||| ||||| ||| ||||||| || | | | | |||| |||||| | ||||| Sbjct 46889 TATATCTTGTTCGAGAAAAGCTTTATACGAACACTCTGGTGTCCTTGGATTGTAGAGCAC 46830 Query 1578 GATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCA 1637 |||| ||||||| || |||||||||||| | || || || || || || || | ||| Sbjct 46829 GATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTCCA 46770 Query 1638 GTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGGATTG-- 1695 | | |||||| |||| | || || || | ||| || || || |||| | Sbjct 46769 ATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATA----GGATAGAG 46714 Query 1696 --ACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGAAAT-CA 1752 || |||||||| ||||| ||| | | ||| || || | ||||| |||| || Sbjct 46713 ATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAATTAAAATCCA 46654 Query 1753 AGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTT 1805 || | || | | || |||||||||| ||||| || ||||| |||||||| Sbjct 46653 TGAAG-CCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 >seq1010 Length=204159 Score = 95.1 bits (104), Expect = 2e-16 Identities = 244/362 (67%), Gaps = 16/362 (4%) Strand=Plus/Plus Query 1455 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCTCTCAGTGG 1514 ||||| ||||| ||||| |||| ||||| ||||| |||||||||| | || Sbjct 36376 ATAGAAGGGGGTGTTGACAAAGAAGAATTCTACATTTCCTAATGTCCAGTTTTTCCAACT 36435 Query 1515 TGCATTTTCCTCTTTCTCGAGGAAATCTTTATA-TGAcccccccTCTCC-TGGATTGCAC 1572 | |||| | |||| | ||| ||| |||||| | | | | ||| ||||||||| Sbjct 36436 TAAATTTACATCTTGTTTGAGAAAAGATTTATACTAATATTCGGTGTCCCTGGATTGCAG 36495 Query 1573 AGCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA-TTTACAGTTGGA 1631 |||||||| ||||||| | ||||||||||||| | || || || || ||| | || Sbjct 36496 AGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTACTTGACA-TGTGA 36554 Query 1632 CTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGG 1691 ||||| | | | ||||| ||||| || ||||| | ||| | || || || Sbjct 36555 TTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAAT--TTTTTTTGCAAATA----GG 36608 Query 1692 ATTG----ACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGA 1747 || | ||||||||||||| |||||| | | | | || || | ||||| | Sbjct 36609 ATCGAGACACATCATCTATGAAATTATACCATGCATTAATCGAAAATGATTTCGAATTAA 36668 Query 1748 AAT-CAAGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTTG 1806 ||| || || | || | | || ||| |||||||||||| || ||||| |||||||| Sbjct 36669 AATCCATGAAG-CCCATTATGTAGTTACGTGGGCCTAAAGATCGTGCCCATATTGTCTTC 36727 Query 1807 CC 1808 || Sbjct 36728 CC 36729 Score = 91.5 bits (100), Expect = 2e-15 Identities = 240/362 (66%), Gaps = 12/362 (3%) Strand=Plus/Minus Query 1455 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCTCTCAGTGG 1514 ||||| |||| || |||||||| ||||| |||||| |||||||||| ||| | Sbjct 41027 ATAGAAAGGGGTGTCGAGGAAGAAGAATTCTGCATTTCTTAATGTCCATTTCTTCAAAGT 40968 Query 1515 TGCATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccTCT---CCTGGATTGCA 1571 | |||| | || | || || ||| |||||| || | ||| ||||||| Sbjct 40967 TAAATTTACATCATGTTCTAGAAAAGATTTATACGAATATTTGGGTGTCCCTAGATTGCA 40908 Query 1572 CAGCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGA 1631 |||||||| || |||| | ||||||||| ||| || || || || ||| || || Sbjct 40907 GAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAGCATTTGA 40848 Query 1632 CTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGG 1691 ||||| | | ||| ||| ||| | || ||||| || ||| ||| | | || Sbjct 40847 TTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTT---TTTTTGCAAATAGG 40791 Query 1692 ATTGACA----TCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGA 1747 || || | |||||||| || |||||| | | ||| || || | ||||| | Sbjct 40790 ATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTGAATTAA 40731 Query 1748 AATCAA-GATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTTG 1806 |||| | || | || | | || |||||||||||||||| || |||| |||||||| Sbjct 40730 AATCTATGAAGCCCATTATG-TAGTTATGTGGGCCTAAAGATCGTTCCCATATTGTCTTT 40672 Query 1807 CC 1808 || Sbjct 40671 CC 40670 >seq77518 Length=14724 Score = 91.5 bits (100), Expect = 2e-15 Identities = 239/359 (67%), Gaps = 7/359 (2%) Strand=Plus/Minus Query 1455 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCTCT-CAGTG 1513 |||||| ||| || || |||| ||||| ||||||| ||| ||||| | | | || | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1514 GTGCATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccT---CTCCTGGATTGC 1570 || |||| ||| || | ||| ||||||| || | | || ||||||| Sbjct 2449 -TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGC 2391 Query 1571 ACAGCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA-TTTACAGTTG 1629 | || ||||| |||| || || |||||||||||||| | ||| | || ||| || ||| Sbjct 2390 AAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTG 2331 Query 1630 GACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGC 1689 |||| |||| ||| || || | || | | | |||||| |||| || Sbjct 2330 -ACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCT 2272 Query 1690 GGATTGACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGAAA 1749 ||| ||||||||| |||||||||||| | | | || |||||| | |||| ||| Sbjct 2271 GGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAA 2212 Query 1750 TCAAGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTTGCC 1808 || | | || | | |||||||||||| || || ||| ||||| | ||| || || Sbjct 2211 TCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 2e-15 Identities = 237/358 (66%), Gaps = 5/358 (1%) Strand=Plus/Plus Query 1455 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCTCTCAGTGG 1514 |||||| |||| || || |||| |||| |||||||| ||| ||| | | | || Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1515 TGCATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccT---CTCCTGGATTGCA 1571 || |||| ||| | || | ||| ||||||| || | | || |||||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCA 43551 Query 1572 CAGCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA-TTTACAGTTGG 1630 | |||||| |||| || || |||||||||||||| || || || || ||| || || | Sbjct 43552 AATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA-TTTG 43610 Query 1631 ACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCG 1690 ||||||| | ||| || || || || | | | || ||| |||| || | Sbjct 43611 ACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTG 43670 Query 1691 GATTGACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGAAAT 1750 || || ||||| |||||||||||| | | || || ||| | ||||| |||| Sbjct 43671 GAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAAT 43730 Query 1751 CAAGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTTGCC 1808 | | | || | | |||||||||||| || || | ||| ||||| | ||| || || Sbjct 43731 CCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq3439 Length=62978 Score = 91.5 bits (100), Expect = 2e-15 Identities = 238/363 (66%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 1455 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCTCTCAGTGG 1514 ||||||||||| || || |||| |||| ||||||| || ||||| | | || Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1515 TGCATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccTCTCCTGGATTGCACAG 1574 || ||| ||| || | ||| |||||| || | ||| ||||||| || Sbjct 1006 TGAATTGGACTCCAAATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAG 947 Query 1575 CACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTG 1634 ||||| ||| || || |||||||||||||| || ||||| || || ||||| || Sbjct 946 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATG 887 Query 1635 CCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGGATT 1694 ||| | || || || | || | | | ||||| |||| || | |||| Sbjct 886 CCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGG 827 Query 1695 GACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGAAATCAAG 1754 ||||||||| |||||||||||| | | ||| ||||| | ||||| ||||| | Sbjct 826 GACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAT 767 Query 1755 ATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTTGCCCGTTCG 1814 | || | | || || ||||||||||| | ||||||||| ||| || || ||| Sbjct 766 AAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 707 Query 1815 TGA 1817 ||| Sbjct 706 TGA 704 >seq54129 Length=2260 Score = 86.0 bits (94), Expect = 1e-13 Identities = 176/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 1560 TCCTGGATTGCACAGCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA 1619 ||| |||||||| || ||||| ||| || || ||||||||||||| || ||||| || Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1620 -TTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCT 1678 ||| || |||| ||| |||| | || || || | || | | | ||||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1679 TTAAGTATTGCGGATTGACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCC 1738 |||| || | |||| |||||| || |||||||||||| || | ||| |||||| Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTT 2080 Query 1739 TAGAATTGAAATCAAGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACA 1798 | ||||| |||| | | || | | || || ||| ||| ||| | ||||||||| Sbjct 2079 TGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCATG 2020 Query 1799 TTGTCTTGCCCGTTCGTGA 1817 ||| || || ||| ||| Sbjct 2019 CTGTTTTTCCTATTCTTGA 2001 >seq3283 Length=49157 Score = 86.0 bits (94), Expect = 1e-13 Identities = 239/364 (66%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 1455 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTTTTTAATGTCCAGGCTCTCAGTGG 1514 |||| |||||| || || |||| ||||| ||||||| || ||||| | | || Sbjct 2386 ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 2327 Query 1515 TGCATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccTCTCCTGGATTGCACAG 1574 || ||| ||| || | ||| |||||| || | ||| |||||||| || Sbjct 2326 TGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAG 2267 Query 1575 CACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATA-TTTACAGTTGGACT 1633 ||||| ||| || || |||||||||||||| || || || || ||| || |||| || Sbjct 2266 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCA-TTGGCCT 2208 Query 1634 GCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGGAT 1693 |||| | || || || | || | | | ||||| |||| || | |||| Sbjct 2207 GCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAG 2148 Query 1694 TGACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGAAATCAA 1753 ||| || || |||||||||||| | | ||| ||||| | ||||| ||||| | Sbjct 2147 GGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCA 2088 Query 1754 GATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTTGCCCGTTC 1813 | || | | || || ||||||||||| | ||||||||| ||| || || ||| Sbjct 2087 TAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTC 2028 Query 1814 GTGA 1817 ||| Sbjct 2027 TTGA 2024 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 4e-12 Identities = 159/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 1566 ATTGCACAGCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACA 1625 |||||| || || |||||||| || || ||||||||||| | ||||| ||||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1626 GTTGGACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAG-- 1683 | | |||||| | | ||||||||| | ||| |||| ||||| ||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTT---CTTCCAGAG 70502 Query 1684 -TATTGCGGATTGACATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGA 1742 || ||| ||| |||||||||||||||||| | |||||| || | | Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCT 70442 Query 1743 ATTGAAATCAAGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCA 1796 ||||||||| | | || | | ||||||||||| || ||| | |||||| Sbjct 70441 ATTGAAATCCATAACGCCCATAAAGTAATTATGTGGACCCAAACTTCTAGCCCA 70388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8244950787710