Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008317.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq3283 104 4e-19 seq3439 100 5e-18 seq22495 91.5 3e-15 seq953 80.6 5e-12 seq54129 78.8 2e-11 seq5745 77.0 6e-11 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1702 GGTCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCA 1761 ||||| |||||||| || | ||| |||| || || ||||||||||||| ||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1762 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1816 ||||| | ||| ||||| | | || || || | ||| | || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1817 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTCATTGCTGTAGACC 1875 ||| ||| | ||| ||||| || ||||||||||||||||| ||||| ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1876 TTTGGACTCAAGTCAAGATGACCACACAAGTAGTTGTGTGGCCCTAATGACCTTGCCCAC 1935 || | | | || || | | || | |||||||||||| |||||||| | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1936 ATTGTCTTGCCT 1947 ||| || ||| Sbjct 2043 GCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 173/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1702 GGTCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCA 1761 ||||| ||||||| || | ||| |||| || || ||||||||||||| |||||| || Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1762 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1816 ||||| | |||| ||||| | | || || || | ||| | || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1817 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTCATTGCTGTAGACC 1875 ||| ||| | ||| || ||||| ||||||||||||||||| ||||| ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1876 TTTGGACTCAAGTCAAGATGACCACACAAGTAGTTGTGTGGCCCTAATGACCTTGCCCAC 1935 || | | | || || | | || | |||||||||||| |||||||| | ||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 724 Query 1936 ATTGTCTTGCCT 1947 ||| || ||| Sbjct 723 GCTGTTTTCCCT 712 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1702 GGTCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCA 1761 ||||| |||||||| || | ||| || | || || | ||||||||||| |||||| || Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1762 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1816 ||||| | ||| ||||||| | || || || | ||| | || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1817 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTCATTGCTGTAGACC 1875 ||| ||| | ||| | |||||| ||||||||||||||||| ||||| ||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1876 TTTGGACTCAAGTCAAGATGACCACACAAGTAGTTGTGTGGCCCTAATGA 1925 || | | | || || | | || | |||||||||||| |||||||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq953 Length=224861 Score = 80.6 bits (88), Expect = 5e-12 Identities = 171/253 (68%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 1702 GGTCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCA 1761 ||||| |||||||| | | ||| |||| || || |||||||||||||||| ||| || Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1762 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1816 ||||| | ||| ||||| | | || | || | ||| | || | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1817 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTCATTGCTGTAGACC 1875 ||| ||| | ||| ||||| || || |||||||||||||| ||||| ||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1876 TTTGGACTCAAGTCAAGATGACCACA-CAAGTAGTTGTGTGGCCCTAATGACCTTGCCCA 1934 || | | | || || | | | | || | |||||||||||| |||||||| | ||||| Sbjct 2020 TTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 Query 1935 CATTGTCTTGCCT 1947 ||| || ||| Sbjct 2079 TGCTGTTTTCCCT 2091 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1702 GGTCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCA 1761 ||||| |||||||| || | ||| |||| || || |||||||||||||||||||| || Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1762 TACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1816 ||||| | ||| || |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1817 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTCATT 1865 ||| ||| | ||| || || || ||||||||||||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq5745 Length=45059 Score = 77.0 bits (84), Expect = 6e-11 Identities = 117/167 (70%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1705 CCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCATAC 1764 || |||||||| | | ||| ||| || |||||||||||||||| |||||| || ||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1765 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1818 || | || ||||| | | ||| || || ||||| | || | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1819 AGATAGTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTCATT 1865 | ||| || | ||||||||||||||||||||||||||| || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8788187314275