Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008374.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq3439 109 1e-20 seq22495 102 1e-18 seq3283 100 5e-18 seq77518 93.3 7e-16 seq54129 89.7 9e-15 seq953 86.0 1e-13 seq5745 84.2 4e-13 seq442 84.2 4e-13 seq33 84.2 4e-13 seq35612 80.6 5e-12 seq490 80.6 5e-12 seq815 78.8 2e-11 >seq3439 Length=62978 Score = 109 bits (120), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 1667 TTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGATACCGCCTTTAAT 1726 |||||| ||| || ||||| |||||||||| | ||| || || ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1727 TTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1786 ||||| ||| ||||| ||||||| |||| ||||| | | || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1787 TTTAAAATGCT------TTAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGC 1840 || | |||||| ||| ||| | ||| || ||||| |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1841 ATCATTGCTGTATAC-TTTTGGA 1862 |||||| || ||| ||||||| Sbjct 799 ATCATT--TGAGTACGTTTTGGA 779 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 1656 TCCAAGTATTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGATA 1715 || ||| || |||||| ||| | ||||| ||||||||||| | ||| | || Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1716 CCGCCTTTAATTTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1775 |||| ||||||||||| ||| ||||| ||||||| ||| ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1776 CCCATGAATTCTTTAAAATGCT------TTAGATAGTGGGGATCTACGTCATCAATGACG 1829 || | ||| | || | |||||| ||| ||| | ||| | |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1830 TTATACCAAGCATCATTGCTGTATAC-TTTTGGA 1862 |||||||| |||||||| || ||| ||||||| Sbjct 217 TTATACCATGCATCATT--TGAGTACGTTTTGGA 186 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 154/215 (72%), Gaps = 11/215 (5%) Strand=Plus/Minus Query 1656 TCCAAGTATTCTTTATATGAT-GATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGAT 1714 |||||| | |||||| ||| ||| ||||| ||||||||||| | ||| || || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1715 ACCGCCTTTAATTTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGGGC 1774 |||||||||||||||| ||| || || ||||||| ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1775 CCCCATGAATTCTTTAAAATGCT------TTAGATAGTGGGGATCTACGTCATCAATGAC 1828 || | ||| | || | |||||| ||| ||| | ||| ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1829 GTTATACCAAGCATCATTGCTGTATAC-TTTTGGA 1862 ||||||||| |||||||| || ||| ||||||| Sbjct 2131 GTTATACCATGCATCATT--TGAGTACGTTTTGGA 2099 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 182/269 (68%), Gaps = 9/269 (3%) Strand=Plus/Minus Query 1656 TCCAAGTATTCTTTATATGATGATGTTGGTCCT---GGATTGCAAAGGAAGATTGACGGG 1712 |||||| || ||||||| ||| | ||| || ||||||||||| | ||| | || Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1713 ATACCGCCTTTAATTTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGG 1772 || |||||||||||||||| || ||| | ||||||| || || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1773 GCCCCCATGAATTCTTTAAAATGCT------TTAGATAGTGGGGATCTACGTCATCAATG 1826 || || | ||| | || | |||||| ||| ||| ||| || ||||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1827 ACGTTATACCAAGCATCATTGCTGTATACTTTTGGACTGAGATCTAGATGGCCACACAAA 1886 ||||||||||| || || || |||| ||| | | | ||| | | ||| | | Sbjct 2253 ACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATA 2194 Query 1887 TAATTGTGTAGACCCAGAGACCTTGCCCA 1915 ||||| ||| |||||| | | |||||| Sbjct 2193 TAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq54129 Length=2260 Score = 89.7 bits (98), Expect = 9e-15 Identities = 132/186 (71%), Gaps = 7/186 (4%) Strand=Plus/Minus Query 1683 GGTCCTGGATTGCAAAGGAAGATTGACGGGATACCGCCTTTAATTTGAATTGGCTTTCCA 1742 ||||| ||||||||||| | ||| || || |||||||||||||||||||| ||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1743 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT----- 1797 ||||||| ||| || |||| || || || | ||| | || |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1798 -TTAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACT 1856 ||| ||| | ||| || || || |||||||||||||| ||||||| |||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GT 2082 Query 1857 TTTGGA 1862 |||||| Sbjct 2081 TTTGGA 2076 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 1656 TCCAAGTATTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGATA 1715 || ||| || |||||| ||| | ||||| |||||||||| | ||| || || Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1716 CCGCCTTTAATTTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1775 ||||||||||||||||||| ||||| ||||||| ||| ||||| | | || | Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACG 1932 Query 1776 CCCATGAATTCTTTAAAATGCT------TTAGATAGTGGGGATCTACGTCATCAATGACG 1829 || | ||| | || | ||| || ||| ||| | ||| ||||| || || ||| Sbjct 1933 CCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACG 1992 Query 1830 TTATACCAAGCATCATT 1846 |||||||| |||||||| Sbjct 1993 TTATACCATGCATCATT 2009 >seq5745 Length=45059 Score = 84.2 bits (92), Expect = 4e-13 Identities = 160/236 (68%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 1686 CCTGGATTGCAAAGGAAGATTGACGGGATACCGCCTTTAATTTGAATTGGCTTTCCATAC 1745 || |||||||||| | ||| | || || || ||||||||||||| ||| || || ||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1746 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT------TT 1799 |||| || ||||| | | ||| || || ||||| | || | |||| | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1800 AGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACTTTT 1859 | ||| ||| | ||||||||||||||||||||| || || || ||| ||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1860 GGACTGAGATCTAGATGGCCACACAAATAATTGTGTAGACCCAGAGACCTTGCCCA 1915 | | | | ||| | | ||| | |||||| ||| |||||| || | |||||| Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq442 Length=237535 Score = 84.2 bits (92), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 1656 TCCAAGTATTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGATA 1715 |||||| || |||||| ||| | | ||||| ||||||||||| ||| || || Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1716 CCGCCTTTAATTTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCC 1775 ||||||||||||||| || ||||| ||||||| ||| ||| ||| | ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1776 CCCATGAATTCTTTAAAATGCT------TTAGATAGTGGGGATCTACGTCATCAATGACG 1829 || | ||| | || | |||||| ||| ||| | | | ||||| || || ||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACG 22929 Query 1830 TTATACCAAGCATCATT 1846 ||||||| |||||||| Sbjct 22930 TTATACC-TGCATCATT 22945 >seq33 Length=454124 Score = 84.2 bits (92), Expect = 4e-13 Identities = 160/236 (68%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 1686 CCTGGATTGCAAAGGAAGATTGACGGGATACCGCCTTTAATTTGAATTGGCTTTCCATAC 1745 || ||||||||||| | ||| | || || |||| ||||||||||| ||| ||||| ||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1746 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCT------TT 1799 |||| || ||||||| | || | || | ||| | || | |||| | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1800 AGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACTTTT 1859 | ||| ||| ||||||||||||||||||||||| || || || |||| | | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1860 GGACTGAGATCTAGATGGCCACACAAATAATTGTGTAGACCCAGAGACCTTGCCCA 1915 | | | | ||| | | ||| | ||||| ||| |||||| || | |||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 5e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1656 TCCAAGTATTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGATA 1715 |||||| || |||||| ||| | ||||| ||||||||||| | ||| || || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1716 CCGCCTTTAATTTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCA 1762 |||||||||||||||| ||| ||||| ||||||| |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 5e-12 Identities = 170/247 (69%), Gaps = 14/247 (6%) Strand=Plus/Minus Query 1691 ATTGCAAAGGAAGATTGACGGGATACCGCCTTTAATTTGAATTGGCTTTCCATACTTTGT 1750 |||||| |||| ||||| || || || ||||||||||| |||||||| |||| |||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1751 GTTGCTTTGCCAGTCCCTTTG---GGCCCCCATGAATTCTTTAAAATGCTT----TAGAT 1803 | ||||||| || || |||||| || | || | ||||||| ||| Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1804 AG-TG-GGGATCTACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACTTTTGG 1861 || || ||| |||||||| |||||||||||||| | |||||| || ||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCT 70442 Query 1862 ACTGAGATCTAGATGGCCACACAAA-TAATTGTGTAGACCCAGAGACCTTGCCCACGTCG 1920 | ||| ||| | | ||| || ||| ||||| ||| |||||| | || ||||| | Sbjct 70441 ATTGAAATCCATAACGCC-CATAAAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 1921 TCTTCCC 1927 ||||||| Sbjct 70382 TCTTCCC 70376 >seq815 Length=151552 Score = 78.8 bits (86), Expect = 2e-11 Identities = 141/203 (69%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 1667 TTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGATACCGCCTTTAAT 1726 |||||| ||| || ||||| ||||||||||| | || || || ||||||||||| Sbjct 85439 TTTATAGGATAATCA-GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1727 TTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1786 |||| || ||| | ||||||| ||| | ||||| | || || || | ||| | Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1787 TTTAAAATGCT------TTAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGC 1840 || | ||| || ||| ||| | || ||||| || |||||||||||||| || Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1841 ATCATTGCTGTATAC-TTTTGGA 1862 |||||| || ||| ||||||| Sbjct 85260 ATCATT--TGAGTACGTTTTGGA 85240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8663752087900