Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008377.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq3439 125 1e-25 seq3283 125 1e-25 seq953 104 4e-19 seq54129 102 1e-18 seq4295 100 5e-18 seq22495 98.7 2e-17 seq20728 95.1 2e-16 seq5745 84.2 4e-13 seq815 84.2 4e-13 seq35612 77.0 6e-11 >seq3439 Length=62978 Score = 125 bits (138), Expect = 1e-25 Identities = 184/259 (71%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 1717 GGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1776 || ||| ||||||| || | ||| |||| || || ||||||||||||| |||||| ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1777 TACTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTT----- 1831 ||||| | |||| ||||| | | ||| || || | ||| | || | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1832 -TGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACC 1890 | | ||||| ||| |||||||| ||||||||||||||||| |||||||| | || Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGT--ACG 786 Query 1891 CTTGGG--CTAAGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCC 1948 || || ||| ||| ||| || || || || ||||||||||| || | ||||| Sbjct 785 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 726 Query 1949 ACATTGTCTTCCCTGTTCT 1967 | ||| |||||| |||| Sbjct 725 ATGCTGTTTTCCCTATTCT 707 >seq3283 Length=49157 Score = 125 bits (138), Expect = 1e-25 Identities = 184/259 (71%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 1717 GGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1776 || ||||||||||| || | ||| |||| || || ||||||||||||| |||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1777 TACTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTT----- 1831 ||||| | ||| |||||| | | ||| || || | ||| | || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1832 -TGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACC 1890 | | ||||| ||| || || || ||||||||||||||||| |||||||| | || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGT--ACG 2106 Query 1891 CTTGGG--CTAAGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCC 1948 || || ||| ||| ||| || || || || ||||||||||| || | ||||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1949 ACATTGTCTTCCCTGTTCT 1967 | ||| |||||| |||| Sbjct 2045 ATGCTGTTTTCCCTATTCT 2027 >seq953 Length=224861 Score = 104 bits (114), Expect = 4e-19 Identities = 181/258 (70%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1717 GGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1776 || ||||||||||| | | ||| |||| || || |||||||||||||||| ||| ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1777 TACTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTT--TAA-AGTGTT-- 1831 ||||| | ||| |||||| | | ||| | || | ||| | || ||| | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1832 -TGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACC 1890 | | ||||| ||| || || || || |||||||||||||| |||||||| || Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1891 CTTGGGCTAAGATCTATATGACCACA-TAGATAATTATGTGGGCCTAAGGACCTAGCCCA 1949 | | ||| ||| ||| | | || || || || ||||||||||| || | |||||| Sbjct 2020 TTCGAATTAAAATCCATA-AATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 Query 1950 CATTGTCTTCCCTGTTCT 1967 ||| |||||| |||| Sbjct 2079 TGCTGTTTTCCCTATTCT 2096 >seq54129 Length=2260 Score = 102 bits (112), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1717 GGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1776 || ||||||||||| || | ||| |||| || || |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1777 TACTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTT--TAAAG--TGTT- 1831 ||||| | ||| ||| |||| ||| || || | ||| | || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1832 -TGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATA 1886 | | ||||| ||| ||||| || ||||||||||||||| | |||||||| || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq4295 Length=67413 Score = 100 bits (110), Expect = 5e-18 Identities = 200/292 (68%), Gaps = 11/292 (4%) Strand=Plus/Minus Query 1677 ATTTTTATCTTCTTCGAGATATTCTTTATAGGAAGCCGTTGG---CCCAGGATTGCAGAG 1733 |||| |||||| ||||||| | ||||||| ||| | ||| || |||||| |||| Sbjct 46892 ATTTATATCTTGTTCGAGAAAAGCTTTATACGAACACTCTGGTGTCCTTGGATTGTAGAG 46833 Query 1734 GAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTCTG 1793 | |||| |||||| || |||||||||||| |||||| |||||||| | || | Sbjct 46832 CACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTT 46773 Query 1794 CCAGTCCCTCTGGGCCCCCATGAATTCTTT---AAAGTGTTTGAGATAATGCG---GGTC 1847 ||| | ||||||| | |||| ||||| | | | ||| | ||| | | Sbjct 46772 CCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGA 46713 Query 1848 AACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACCCTTGGGCTAAGATCTAT 1907 || |||||||| ||||| |||||||| | ||| ||| | | | ||| ||| || Sbjct 46712 TACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAATTAAAATCCAT 46653 Query 1908 -ATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCCACATTGTCTT 1958 | | ||| || || |||||||||| ||| |||| ||||| |||||||| Sbjct 46652 GAAGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1717 GGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1776 || ||||||||||| || | ||| || | || || | ||||||||||| |||||| ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1777 TACTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTT----- 1831 ||||| | ||| |||||||| | ||| || || | ||| | || | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1832 -TGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATA 1886 | | ||||| ||| | ||||| ||||||||||||||||| |||||||| || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA 195 >seq20728 Length=3653 Score = 95.1 bits (104), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 9/233 (4%) Strand=Plus/Plus Query 1742 TTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTCTGCCAGTCCC 1801 |||| || || ||||||||||||| |||||| |||||||| | ||| ||||| || | Sbjct 1440 TTGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGC 1498 Query 1802 TCTGGGCCCCCATGAATTCTTTAAAGTGTT------TGAGATAATGCGGGTCAACATCAT 1855 ||| || || | ||| | || | | || | | | ||||| ||| || |||| Sbjct 1499 GCTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCAT 1558 Query 1856 CTATGACGTTATACCATGCTTCATTTGAATAGACCCTTGGGCTAAGATCTATATGACCAC 1915 | ||||||||||| ||||| |||||||| || | | ||| ||||||| | | | Sbjct 1559 CGATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATA-AATCTC 1617 Query 1916 A-TAGATAATTATGTGGGCCTAAGGACCTAGCCCACATTGTCTTCCCTGTTCT 1967 | || || || |||||| |||| || | |||||| ||| |||||| |||| Sbjct 1618 ATTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 1670 >seq5745 Length=45059 Score = 84.2 bits (92), Expect = 4e-13 Identities = 172/256 (67%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 1719 CCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTA 1778 |||||||||||| | | ||| ||| || || ||||||||||||| |||||| ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1779 CTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTG----- 1833 ||| | || |||||| | | || || || ||||| | || | | ||||| Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1834 -AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACCCT 1892 | |||| || | ||||| ||||||||||||||||| || || || || | Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1893 TGGGCTAAGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCCACAT 1952 | | | ||| ||| || || |||||||||||| || || || | ||||| | Sbjct 43720 CGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1953 TGTCTTCCCTGTTCTA 1968 ||| || || ||||| Sbjct 43780 TGTTTTACCGATTCTA 43795 >seq815 Length=151552 Score = 84.2 bits (92), Expect = 4e-13 Identities = 175/259 (68%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 1717 GGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1776 || ||||||||||| || | || |||| || || |||||||||||| ||||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1777 TACTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTT----- 1831 ||||| | ||| || ||||| | ||| || || | ||| | || | | | | Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1832 -TGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACC 1890 | | ||||| | | || || || ||||||||||||||||| |||||||| | || Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGT--ACG 85247 Query 1891 CTTGGG--CTAAGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCC 1948 || || ||| ||| ||| || || || || |||| |||||| | | ||||| Sbjct 85246 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCC 85187 Query 1949 ACATTGTCTTCCCTGTTCT 1967 | || | |||||| |||| Sbjct 85186 ATGTTATTTTCCCTATTCT 85168 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1717 GGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1776 || ||||||||||| || | ||| |||| || || ||||||||||||| |||||| ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1777 TACTTCGTGTTGCTCTGCCA 1796 ||||| | |||| |||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8813762250075