Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008492.1 Length=2606 Score E Sequences producing significant alignments: (Bits) Value seq33 127 3e-26 seq5745 114 2e-22 seq1993 111 3e-21 seq4295 109 9e-21 seq3283 102 1e-18 seq77518 100 5e-18 seq1010 96.9 6e-17 seq5493 95.1 2e-16 seq22495 91.5 2e-15 seq3439 91.5 2e-15 seq490 89.7 8e-15 seq54129 87.8 3e-14 seq6801 87.8 3e-14 >seq33 Length=454124 Score = 127 bits (140), Expect = 3e-26 Identities = 174/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTA- 1607 || ||||||||||||||||| |||| ||||| | ||||||||||||||| || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1608 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTT 1667 |||||| ||||||||||||| ||| | || | | | || | || ||| | Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1668 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCG 1727 || ||| || | |||||||||||||||||||||| | | |||||||| || | Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1728 GGCATTGAAATCCA-GGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCA 1784 | ||| ||||||| | ||| || | ||||||||||| || |||| ||| ||||| Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATG-TAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq5745 Length=45059 Score = 114 bits (126), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTA- 1607 || |||||||||| |||||| |||| ||||| ||||||||||||||||| |||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1608 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTT 1667 ||||| |||||||||||| | || || || | | | || | || ||| | Sbjct 43601 TTTGC-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1668 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCG 1727 || ||| || | || ||||||||||||||||||| | |||||||| || Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1728 GGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCA 1784 | ||| ||||||| || | | |||||||||||| || |||| ||| ||||| Sbjct 43720 CGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq1993 Length=81530 Score = 111 bits (122), Expect = 3e-21 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1546 TCACCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCG 1605 || || ||||||||||||||||| |||| ||||| |||||||||||||||| |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1606 TA-TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAG 1664 || |||||| ||||||||||| | || || | | | | || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1665 CTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCA 1724 ||| ||| || | |||||||||||||||||||||| | | | |||||| || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1725 CCGGGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCA 1784 | ||| ||||||| || | | |||||||||||| || |||| ||| | ||| Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 >seq4295 Length=67413 Score = 109 bits (120), Expect = 9e-21 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1551 TGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTT 1610 ||||||| | ||||||||| ||||||| || |||||||||||| |||| || ||||| || Sbjct 46844 TGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTT 46785 Query 1611 GCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAG 1670 | |||||| | ||| | | ||||||| | | || ||||| || | ||| || | Sbjct 46784 GGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAA 46725 Query 1671 ATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCGGGC 1730 |||| | | |||||||| || ||||| ||| | | |||||| | | | Sbjct 46724 ATAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA 46665 Query 1731 ATTGAAATCCA-GGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATCG 1789 ||| ||||||| | | ||| || | || |||||||||| ||| | || ||||| || | Sbjct 46664 ATTAAAATCCATGAAGCCCATTATG-TAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1790 TCTT 1793 |||| Sbjct 46605 TCTT 46602 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 179/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTA- 1607 || ||||||||||| ||||| ||| ||||| ||||||||||||||||| || ||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1608 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTT 1667 ||||| ||| | |||||| | ||| || || | | | || | ||||| | Sbjct 2220 TTTGC-ATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1668 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCG 1727 || ||| | ||| | |||||| || |||||||||||| | || || || || Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1728 GGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACAT 1787 || ||| ||||||| ||| | | || || ||||||||||| | ||||||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2042 Query 1788 CGTCTTCCCTGTCCTCGA 1805 || |||||| | || || Sbjct 2041 TGTTTTCCCTATTCTTGA 2024 >seq77518 Length=14724 Score = 100 bits (110), Expect = 5e-18 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTA- 1607 || ||||||||||| ||||| |||| ||||| |||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1608 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTT 1667 ||||| ||||||||| |||| || || || | | | || | |||||| | Sbjct 2340 TTTGC-ATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1668 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCG 1727 || ||| || | ||| |||||||||||||||||| | | |||||||| || Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTT 2222 Query 1728 GGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCA 1784 ||| ||||||| || | | |||||||||||| || ||| ||| ||||| Sbjct 2221 CAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq1010 Length=204159 Score = 96.9 bits (106), Expect = 6e-17 Identities = 191/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAT 1608 ||||||||||| |||||||| ||||||| | |||||||||||||| | || ||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1609 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1668 ||| || ||| ||||| | | || ||||| | || |||||||| | ||| | Sbjct 36544 TTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAAT--TTTTTTTGC 36601 Query 1669 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCGG 1728 | |||| | | || ||||| |||| |||||| | | ||||| | | Sbjct 36602 AAATAGGATCGAGACACATCATCTATGAAATTATACCATGCATTAATCGAAAATGATTTC 36661 Query 1729 GCATTGAAATCCA-GGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACAT 1787 | ||| ||||||| | | ||| || | || ||| |||||||||| | || ||||| || Sbjct 36662 GAATTAAAATCCATGAAGCCCATTATG-TAGTTACGTGGGCCTAAAGATCGTGCCCATAT 36720 Query 1788 CGTCTTCCCTGTCCTCGAGTCACCCTCTACTATGAGACT 1826 |||||||| | || | || |||| ||||||||| Sbjct 36721 TGTCTTCCCAATTCTAGCTGGGCCTTCTAATATGAGACT 36759 Score = 93.3 bits (102), Expect = 7e-16 Identities = 191/280 (68%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAT 1608 ||| ||||||| |||||||| || |||| | ||||||||| |||||| || ||||| Sbjct 40918 CCTAGATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTAC 40859 Query 1609 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1668 || |||||| ||||| | | |||| ||| | || |||||||| || ||| || Sbjct 40858 TTAGCATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTTTTTTG 40799 Query 1669 -AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCG 1727 | |||| | | |||||||| || || |||||| | | |||||| | | Sbjct 40798 CAAATAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTT 40739 Query 1728 GGCATTGAAATCCAGGT-GTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACA 1786 | ||| ||||| | | | ||| || | || |||||||||||||| | || |||| | Sbjct 40738 TGAATTAAAATCTATGAAGCCCATTATG-TAGTTATGTGGGCCTAAAGATCGTTCCCATA 40680 Query 1787 TCGTCTTCCCTGTCCTCGAGTCACCCTCTACTATGAGACT 1826 | ||||| || | || | ||| |||| |||| |||| Sbjct 40679 TTGTCTTTCCAATTCTAGTTGGACCTTCTAATATGTGACT 40640 >seq5493 Length=32325 Score = 95.1 bits (104), Expect = 2e-16 Identities = 116/155 (75%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 1551 TGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTT 1610 ||||||||| | ||| || ||| ||| || | ||||||||||||||| || ||||| || Sbjct 31560 TGGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTT 31501 Query 1611 GCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAG-TGCTTTAGCTTTA 1669 |||||| ||||||| | || | || || || ||||||||| | |||| || | Sbjct 31500 CACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTT-GC---A 31445 Query 1670 GATAGTGCGGTGCGACGTCATCAATGACGTTATAC 1704 |||| ||||| ||||||||||||| ||| ||| Sbjct 31444 GATATGTCGGTGATACGTCATCAATGATGTTGTAC 31410 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 2e-15 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTA- 1607 || ||||||||||| ||||| | | ||||| | ||||||||||||||| || ||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1608 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTT 1667 |||||| || | |||||||| ||| || || | | | || || ||||| | Sbjct 307 TTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1668 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCG 1727 || ||| | ||| | || |||||| |||||||||||| | || || || || Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 189 Query 1728 GGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGA 1779 || ||| ||||||| ||| | | || || ||||||||||| | |||| Sbjct 188 GGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq3439 Length=62978 Score = 91.5 bits (100), Expect = 2e-15 Identities = 174/254 (69%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 1553 GATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTA-TTTG 1611 |||||||||| ||||| ||| ||||| ||||||||||||||||| || ||||| |||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1612 CAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGA 1671 | || | ||||| | ||| || || | | | || | ||||| ||| | Sbjct 896 C-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAA 838 Query 1672 TAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCGGGCA 1731 || | ||| | ||| ||||| |||||||||||| | || || || || || | Sbjct 837 TAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAA 778 Query 1732 TTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATCGTC 1791 || ||||||| ||| | | || || ||||||||||| | ||||||||| || Sbjct 777 TTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTT 718 Query 1792 TTCCCTGTCCTCGA 1805 |||||| | || || Sbjct 717 TTCCCTATTCTTGA 704 >seq490 Length=137872 Score = 89.7 bits (98), Expect = 8e-15 Identities = 115/154 (75%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 1554 ATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCA 1613 |||||| || || |||||||| || || ||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1614 ATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTT-TAGAT 1672 || | |||||| | || |||||| | ||| || |||| ||||| ||| ||| Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTT---CTTCCAGAG 70502 Query 1673 AG-TGC-GGTGCGACGTCATCAATGACGTTATAC 1704 || ||| || | ||||||||| |||||||||||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATAC 70468 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTA- 1607 || ||||||||||| ||||| ||| ||||| ||||||||||||| ||| || ||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1608 TTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTT 1667 ||||| ||| | ||| |||| | ||| || || | | | || | ||||| | Sbjct 2197 TTTGC-ATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1668 TAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCG 1727 || ||| | ||| | ||| || || |||||||||||| || || || || || Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTT 2079 Query 1728 GGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCA 1784 || ||| |||| || ||| | | || || ||| ||| ||| | ||||||||| Sbjct 2078 GGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 >seq6801 Length=49729 Score = 87.8 bits (96), Expect = 3e-14 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 1552 GGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTA-TTT 1610 ||| ||||||| ||||| |||| ||||| ||||||||||||||||| |||||||| ||| Sbjct 47097 GGAGTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTT 47156 Query 1611 GCAATTTGACTGCCAGT 1627 || |||||||||| ||| Sbjct 47157 GC-ATTTGACTGCTAGT 47172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8222572092280