Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008517.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq3283 109 1e-20 seq77518 96.9 6e-17 seq22495 91.5 3e-15 seq3439 91.5 3e-15 seq33 89.7 9e-15 seq5745 87.8 3e-14 seq4104 86.0 1e-13 seq1993 84.2 4e-13 seq6801 82.4 1e-12 seq35612 77.0 6e-11 >seq3283 Length=49157 Score = 109 bits (120), Expect = 1e-20 Identities = 173/246 (70%), Gaps = 14/246 (6%) Strand=Plus/Minus Query 1625 GCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAACTCTTTA 1684 ||||||| || || |||| ||| || |||||| || |||| |||| |||| Sbjct 2355 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTA 2296 Query 1685 TAACTGGAGTTG----GGTCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTAT 1740 || ||| ||| ||||| |||||||| || | |||| | ||||| |||||||| || Sbjct 2295 TA---GGA-TTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2240 Query 1741 TTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTC 1800 ||||||||| ||||||||||||| ||| | ||||| | || || || || | || | Sbjct 2239 TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2180 Query 1801 TTTAAAGTGCT------TTAGGTAGTGGGGATCAACGTCATCAATGACGTTATACCAAAC 1854 || | | |||| ||| || | ||| ||||| || |||||||||||||| | Sbjct 2179 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGC 2120 Query 1855 ATCATT 1860 |||||| Sbjct 2119 ATCATT 2114 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 163/236 (69%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 1625 GCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAACTCTTTA 1684 ||||||| ||||| ||| ||||| || |||||| ||| |||| ||| ||||| Sbjct 2478 GCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAATGCTTTA 2419 Query 1685 TAACTGGAGTTGGGTCCT---GGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATT 1741 ||| | | || || |||||||| || | |||| ||||| |||||||| ||| Sbjct 2418 TAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATT 2359 Query 1742 TGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCT 1801 ||||||| || ||||||||| |||||| || |||| | ||| || || | || | | Sbjct 2358 TGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGT 2299 Query 1802 TTAAAGTGCTTT------AGGTAGTGGGGATCAACGTCATCAATGACGTTATACCA 1851 | | | |||||| | || ||| || |||||||||||||||||||| Sbjct 2298 TGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCA 2243 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1697 GGTCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGAACTGGCTTCCCG 1756 ||||| |||||||| || | |||| | |||| |||| ||| ||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1757 TACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTAAAGTGCT----- 1811 ||||||| ||| | ||||||| | || || || | || | || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1812 -TTAGGTAGTGGGGATCAACGTCATCAATGACGTTATACCAAACATCATT 1860 ||| || | ||| | |||||| |||||||||||||| ||||||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1697 GGTCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGAACTGGCTTCCCG 1756 ||||| ||||||| || | |||| | ||||| |||||||| ||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1757 TACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTAAAGTGCT----- 1811 ||||||| || | ||||| | || || || || | || | || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1812 -TTAGGTAGTGGGGATCAACGTCATCAATGACGTTATACCAAACATCATT 1860 ||| || | ||| || ||||| |||||||||||||| ||||||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 161/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 1625 GCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAACTCTTTA 1684 ||||| | ||||| ||| |||| || |||||| ||| || | |||| ||||| Sbjct 403379 GCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAACGCTTTA 403320 Query 1685 TAACTGGAGTTGGGTCCT--GGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTT 1742 ||| | | || || |||||||| || | |||| ||||| |||| ||| |||| Sbjct 403319 TAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTT 403260 Query 1743 GAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCTT 1802 ||||||| || |||||||||| |||||| ||||||| | || | || | || | || Sbjct 403259 GAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTT 403200 Query 1803 TAAAGTGCT------TTAGGTAGTGGGGATCAACGTCATCAATGACGTTATACCA 1851 | | || | ||| || ||| ||||||||||||||||||||||| Sbjct 403199 GATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCA 403145 >seq5745 Length=45059 Score = 87.8 bits (96), Expect = 3e-14 Identities = 164/240 (68%), Gaps = 17/240 (7%) Strand=Plus/Plus Query 1625 GCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAACTCTTTA 1684 ||||||| ||||| | | |||| || |||||| ||| || | |||| ||||| Sbjct 43463 GCATTTTGTAAAGTCAACGATTTCTAATTTGAATTTGAATCTATATCTAAGAACGCTTTA 43522 Query 1685 TAACTGGAGTTGGGTCCT---GGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATT 1741 ||| | | || || |||||||| | | |||| ||||| || ||||| ||| Sbjct 43523 TAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATT 43582 Query 1742 TGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCT 1801 |||||||| || |||||||||| |||||| ||||| | | ||| || || || || | | Sbjct 43583 TGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGT 43642 Query 1802 T--TAAAGTGCTTTAGGTA--------GTGGGGATCAACGTCATCAATGACGTTATACCA 1851 | ||| || |||| || | ||||| ||||||||||||||||||||| Sbjct 43643 TGATAATGTTTTTTAATTAAATAAGCTGGAGGGAT----GTCATCAATGACGTTATACCA 43698 >seq4104 Length=64936 Score = 86.0 bits (94), Expect = 1e-13 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 1625 GCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAACTCTTTA 1684 ||||||| || || |||| ||| || |||||| || |||| |||| |||| Sbjct 20902 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTA 20843 Query 1685 TAACTGGAGTTGGGTCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGA 1744 || | | |||||| |||||||| || | |||| | ||||| |||||||| |||||| Sbjct 20842 TAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGA 20783 Query 1745 ACTGGCTTCCCGTACTTTGTAT 1766 ||||| || |||||||||| || Sbjct 20782 ACTGGTTTTCCGTACTTTGCAT 20761 >seq1993 Length=81530 Score = 84.2 bits (92), Expect = 4e-13 Identities = 113/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 1700 CCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGAACTGGCTTCCCGTAC 1759 || |||||||| || | |||| ||||| ||| |||| ||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1760 TTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTAAAGTGCT------TT 1813 |||| |||||| ||||| | | ||| || | | || | || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1814 AGGTAGTGGGGATCAACGTCATCAATGACGTTATACCA 1851 | || ||| ||||||||||||||||||||||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCA 74246 >seq6801 Length=49729 Score = 82.4 bits (90), Expect = 1e-12 Identities = 117/164 (71%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 1618 GAATCTCGCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAA 1677 |||| | ||||||| | ||| |||| |||| || |||||| | | |||| ||| Sbjct 47009 GAATTTTGCATTTTGTCAAGTCCAAGATTTCCAATTTGAATTTGAATATAAATCCAAGAA 47068 Query 1678 CTCTTTATAACTGGAGTTGGGTCCT---GGATTGCATAGGAAGATAGTGGGAATTCCGCC 1734 | ||||||| | | || || ||| |||| || | |||| ||||| ||||| Sbjct 47069 CGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGGAATCCCGCC 47128 Query 1735 TTTTATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGT 1778 ||| ||||||||||| || |||||||||| |||||| ||| ||| Sbjct 47129 TTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1697 GGTCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGAACTGGCTTCCCG 1756 ||||| |||||||| || | |||| | ||||| |||||||| ||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1757 TACTTTGTATTTGATTGCCA 1776 ||||||| || | ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8702115565780