Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008559.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq3439 96.9 6e-17 seq3283 93.3 7e-16 seq22495 86.0 1e-13 seq35612 82.4 1e-12 seq4104 80.6 5e-12 seq54129 77.0 6e-11 seq30129 77.0 6e-11 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 169/241 (70%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 1663 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1722 || ||| ||||||| || | ||| | || ||||||||||||||||||||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1723 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGA-AGTGCT---- 1777 ||||||| |||| ||||| | | || || || | ||| | |||| | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 845 Query 1778 --TGAGGAAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCTTCATTGCTGTAGAC 1835 | | | | |||| || ||||| |||||||| ||||| || ||||| ||| Sbjct 844 AATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTA-CG 786 Query 1836 CTTTGGGCTT-AGATCCAGATGTCCACACAGATAATTGTGTGGGCCTAGTGACCTAGCCC 1894 ||||| || | ||||| | ||| | || ||||||||||||| ||| | ||||| Sbjct 785 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 726 Query 1895 A 1895 | Sbjct 725 A 725 >seq3283 Length=49157 Score = 93.3 bits (102), Expect = 7e-16 Identities = 168/241 (70%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 1663 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1722 || ||||||||||| || | ||| | || ||||||||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1723 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGA-AGTGCT---- 1777 ||||||| ||| ||||| | | || || || | ||| | |||| | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 2165 Query 1778 --TGAGGAAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCTTCATTGCTGTAGAC 1835 | | | | |||| ||||| || |||||||| ||||| || ||||| ||| Sbjct 2164 AATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA-CG 2106 Query 1836 CTTTGGGCTT-AGATCCAGATGTCCACACAGATAATTGTGTGGGCCTAGTGACCTAGCCC 1894 ||||| || | ||||| | ||| | || ||||||||||||| ||| | ||||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1895 A 1895 | Sbjct 2045 A 2045 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 1663 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1722 || ||||||||||| || | ||| | | ||||||| ||||||||||||||| |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1723 TACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGA-AGTGCT---- 1777 ||||||| ||| ||||||| | || || || | ||| | |||| | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT-GTTGACAATGCTTCTT 252 Query 1778 --TGAGGAAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCTTCATTGCTGTAGAC 1835 | | | | |||| | |||||| |||||||| ||||| || ||||| ||| Sbjct 251 AATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA-CG 193 Query 1836 CTTTGGGCTT-AGATCCAGATGTCCACACAGATAATTGTGTGGGCCTAGTGA 1886 ||||| || | ||||| | ||| | || ||||||||||||| ||| Sbjct 192 TTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1663 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1722 || ||||||||||| || | ||| | || || |||||||||||||||||||| |||||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1723 TACTTTGTGTTGCTTTGCCA 1742 ||||||| |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1663 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1722 || ||||||||||| || | ||| | || ||||||||||||||||||||||| |||||| Sbjct 20830 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 20771 Query 1723 TACTTTG 1729 ||||||| Sbjct 20770 TACTTTG 20764 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1663 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1722 || ||||||||||| || | ||| | || ||||||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1723 TACTTTG 1729 ||||||| Sbjct 2200 TACTTTG 2194 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1663 GGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1722 || ||||||||||| || | ||| | || ||||||||||||||||||||| | |||||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1723 TACTTTGTGTTGCTTTGCCA 1742 ||||||| ||| ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCA 2450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8612600784060