Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_008794.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq3439 98.7 2e-17 seq3283 95.1 2e-16 seq22495 93.3 7e-16 seq35612 87.8 3e-14 seq4104 82.4 1e-12 seq442 77.0 6e-11 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1681 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1740 ||||| ||||||| || | |||| | ||||| |||||||||||||||||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1741 TATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTT----- 1795 || || | |||| ||||| | | || || || | ||| | || | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1796 -TTAGGTAGTGCGGATCTACGTCATCAATGACGTTGAACCAGGCATCATTGCTGTACACT 1854 ||| || | |||| || ||||| |||||||| |||| |||||||| |||| | Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1855 TTAGGGCTCAGATCTAGATGTCCACACAAATAATTGTGTGGTCCTAATGACCTGGCCCA 1913 || | | | ||| | | ||| | || |||||||| |||||||| | ||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1681 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1740 ||||| |||||||| || | |||| | ||||| |||||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1741 TATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTT----- 1795 || || | ||| ||||| | | || || || | ||| | || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1796 -TTAGGTAGTGCGGATCTACGTCATCAATGACGTTGAACCAGGCATCATTGCTGTACACT 1854 ||| || | |||| ||||| || |||||||| |||| |||||||| |||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1855 TTAGGGCTCAGATCTAGATGTCCACACAAATAATTGTGTGGTCCTAATGACCTGGCCCA 1913 || | | | ||| | | ||| | || |||||||| |||||||| | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 93.3 bits (102), Expect = 7e-16 Identities = 175/258 (68%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 1653 ATCCAGGAATTCTTTATAGCTGGAAGTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||| | |||| ||||||| || ||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGC 1772 |||| ||||||||||||||| |||||||| || | ||| ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1773 CCCCATGAATTCTTTAAAGTGTT------TTAGGTAGTGCGGATCTACGTCATCAATGAC 1826 || | ||| | || | | || | ||| || | |||| | |||||| ||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1827 GTTGAACCAGGCATCATTGCTGTACACTTTAGGGCTCAGATCTAGATGTCCACACAAATA 1886 ||| |||| |||||||| |||| ||| | | | ||| | | ||| | || Sbjct 218 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTA 159 Query 1887 ATTGTGTGGTCCTAATGA 1904 |||||||| |||||||| Sbjct 158 GTTGTGTGGGCCTAATGA 141 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1653 ATCCAGGAATTCTTTATAGCTGGAAGTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||||| |||| ||||||| || ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCA 1760 |||||||||||||||||||| |||||||| || | |||| ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 82.4 bits (90), Expect = 1e-12 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1653 ATCCAGGAATTCTTTATAGCTGGAAGTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||||| ||| ||||||| || |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1745 |||||||||||||||||||| |||||||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq442 Length=237535 Score = 77.0 bits (84), Expect = 6e-11 Identities = 104/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1653 ATCCAGGAATTCTTTATAGCTGGAAGTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||||| |||| ||||||| || | ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGC 1772 |||||||||||||||||| |||||||| || | ||| ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1773 CCCCATGAATTCTTTAAAGTGTTTT 1797 || | ||| | || | | || ||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8666949044390