Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009031.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq3283 131 3e-27 seq3439 129 1e-26 seq22495 118 2e-23 seq953 100 5e-18 seq815 100 5e-18 seq54129 98.7 2e-17 seq20728 78.8 2e-11 seq3059 77.0 6e-11 >seq3283 Length=49157 Score = 131 bits (144), Expect = 3e-27 Identities = 180/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1694 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1753 ||||| |||||||| || | |||| | ||||| |||||||||||||||| || |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1754 TACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCTTC--- 1810 ||||| | ||| ||||| | | ||| || || | ||||| | | | |||||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1811 ---AGGTAGTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAGTACACT 1867 | || | |||| ||||| || ||||||||||||||||||||||| |||||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1868 TTTGGACTCAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCCTAATGACCTGGCCCAC 1927 || | | | | |||| | || || ||| ||||| || |||||||| | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1928 ATTGTCTTGCCT 1939 ||| || ||| Sbjct 2043 GCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 129 bits (142), Expect = 1e-26 Identities = 189/268 (71%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 1678 TTTATACGAGGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1737 |||||| || || ||||| ||||||| || | |||| | ||||| ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1738 TTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTC 1797 ||||| || || |||||||| | |||| ||||| | | ||| || || | ||||| Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1798 CTTAAAGTGCTTC------AGGTAGTGCGGATCAACGTCATCAATGACGTTATACCATGC 1851 | | | |||||| | || | |||| || ||||| ||||||||||||||||| Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1852 ATCATTGGAGTACACTTTTGGACTCAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCC 1911 |||||| |||||| ||| | | | | |||| | || || ||| ||||| || || Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1912 TAATGACCTGGCCCACATTGTCTTGCCT 1939 |||||| | ||||| ||| || ||| Sbjct 739 TAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 118 bits (130), Expect = 2e-23 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1694 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1753 ||||| |||||||| || | |||| | |||| |||| ||||||||||| || || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1754 TACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCTTC--- 1810 ||||| | ||| ||||||| | ||| || || | ||||| | | | |||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1811 ---AGGTAGTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAGTACACT 1867 | || | |||| | |||||| ||||||||||||||||||||||| |||||| | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1868 TTTGGACTCAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCCTAATGA 1917 || | | | | |||| | || || ||| ||||| || |||||||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq953 Length=224861 Score = 100 bits (110), Expect = 5e-18 Identities = 173/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 1694 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1753 ||||| |||||||| | | |||| | ||||| ||||||||||||||||| | || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1754 TACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1808 ||||| | ||| ||||| | | ||| | || | ||||| | | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1809 -TCAGGTAGTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAGTACACT 1867 | | || | |||| ||||| || || |||||||||||||||||||| |||||| | Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1868 TTTGGACTCAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCCTAATGACCTGGCCCAC 1927 || | | | | |||| | | || ||| ||||| || |||||||| | ||||| Sbjct 2020 TTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2079 Query 1928 ATTGTCTTGCCT 1939 ||| || ||| Sbjct 2080 GCTGTTTTCCCT 2091 >seq815 Length=151552 Score = 100 bits (110), Expect = 5e-18 Identities = 173/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1694 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1753 ||||| |||||||| || | ||| | ||||| ||||||||||||||| ||| || || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1754 TACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCTTC--- 1810 ||||| | ||| | ||||| | ||| || || | ||||| | | | | |||| Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1811 ---AGGTAGTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAGTACACT 1867 | || | | || ||||| || ||||||||||||||||||||||| |||||| | Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 85245 Query 1868 TTTGGACTCAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCCTAATGACCTGGCCCAC 1927 || | | | | |||| | || || ||| ||||| | |||||| | | ||||| Sbjct 85244 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCAT 85185 Query 1928 ATTGTCTTGCCT 1939 || | || ||| Sbjct 85184 GTTATTTTCCCT 85173 >seq54129 Length=2260 Score = 98.7 bits (108), Expect = 2e-17 Identities = 134/186 (72%), Gaps = 7/186 (4%) Strand=Plus/Minus Query 1694 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1753 ||||| |||||||| || | |||| | ||||| ||||||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1754 TACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCTTC--- 1810 ||||| | ||| || |||| ||| || || | ||||| | | |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1811 ---AGGTAGTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAGTACACT 1867 | || | |||| || || || ||||||||||||||| ||||||| ||||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA-TGT 2082 Query 1868 TTTGGA 1873 |||||| Sbjct 2081 TTTGGA 2076 >seq20728 Length=3653 Score = 78.8 bits (86), Expect = 2e-11 Identities = 108/150 (72%), Gaps = 7/150 (5%) Strand=Plus/Plus Query 1721 GGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTC 1780 ||||| || ||||||||||||| || || |||||||| | ||| |||| || | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1781 TGGGCCCCCATGAACTCCTTAAAGTGCTTC------AGGTAGTGCGGATCAACGTCATCA 1834 || || || | ||||| | | | ||||| | || | |||| |||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1835 ATGACGTTATACCATGCATCATTGGAGTAC 1864 ||||||||||| ||||||||||| |||||| Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTAC 1590 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1694 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1753 ||||| |||||||| || | |||| | ||||| ||||||||||||||||| || || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1754 TACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCTTC 1810 || || | ||| | ||||| | ||| || || | ||||| | | | |||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTC 20303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8657358174920