Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009088.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq3283 123 4e-25 seq3439 109 9e-21 seq5745 104 4e-19 seq77518 100 5e-18 seq22495 100 5e-18 seq33 100 5e-18 seq4295 98.7 2e-17 seq1993 95.1 2e-16 seq30129 84.2 4e-13 seq54129 82.4 1e-12 seq953 82.4 1e-12 seq490 82.4 1e-12 seq20728 80.6 5e-12 seq3059 78.8 2e-11 seq442 78.8 2e-11 seq35612 77.0 6e-11 >seq3283 Length=49157 Score = 123 bits (136), Expect = 4e-25 Identities = 181/253 (72%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||||||||||| || | ||| |||| || |||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1715 TACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1769 ||||| | ||||| ||||| | | || || || | ||||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1770 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACC 1828 | | | | |||| ||||| || ||||||||||||||||| || || |||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1829 TTTGGACTAAGATC--TAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCC 1886 || | | ||| ||| ||| | |||| | ||||| ||||||||||| || | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1887 ACATTGTCTTCCC 1899 | ||| ||||| Sbjct 2045 ATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 109 bits (120), Expect = 9e-21 Identities = 178/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||| ||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1715 TACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1769 ||||| | |||| ||||| | | || || || | ||||| || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1770 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACC 1828 | | | | |||| || ||||| ||||||||||||||||| || || |||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1829 TTTGGACTAAGATC--TAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCC 1886 || | | ||| ||| ||| | |||| | ||||| ||||||||||| || | ||||| Sbjct 783 TTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 726 Query 1887 ACATTGTCTTCCC 1899 | ||| ||||| Sbjct 725 ATGCTGTTTTCCC 713 >seq5745 Length=45059 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1658 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1717 ||||||||||| | | ||| ||| || || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1718 TTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1774 || | ||| || ||||| | | ||| || || ||||||| || ||| | | || | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1775 AAGT--GC-GGATCTACGTCATCAATGACGTTATACCATGCGTCGTT 1818 || | || ||| | |||||||||||||||||||||||||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq77518 Length=14724 Score = 100 bits (110), Expect = 5e-18 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1658 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1717 ||||||||||| || | ||| ||| || ||||||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1718 TTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGC---TTGAGG 1774 || | ||| || || |||| | ||| || || | ||||| || | | ||| || | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1775 AAGT--GC-GGATCTACGTCATCAATGACGTTATACCATGCGTCGTT 1818 || | || ||| || |||||||||||||||||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq22495 Length=567 Score = 100 bits (110), Expect = 5e-18 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||||||||||| || | ||| || | || |||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1715 TACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1769 ||||| | ||||| ||||||| | || || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1770 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACC 1828 | | | | |||| | |||||| ||||||||||||||||| || || |||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1829 TTTGGACTAAGATCTAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGA 1878 || | | ||| ||| || || | ||||| ||||||||||| || Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 125/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1658 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1717 ||||||||||| || | ||| ||| || |||| ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1718 TTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1774 || | ||| || ||||||| | || | || | ||||| || ||| | | || | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1775 AAGT--GC-GGATCTACGTCATCAATGACGTTATACCATGCGTCGTT 1818 || | || ||| ||||||||||||||||||||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq4295 Length=67413 Score = 98.7 bits (108), Expect = 2e-17 Identities = 170/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 1661 GGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTG 1720 |||||| |||| | |||| ||| ||||| |||||||||||| |||| || ||||||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1721 GTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTT---AAAGTGCTTGAGGAAG 1777 | ||| || | ||| | |||||| | |||| |||||| | | | || | || Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1778 TGCG---GATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACCTTTGGA 1834 | | || ||||||||| || ||||| |||||||| | || | || | | Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAA 46664 Query 1835 CTAAGATCTAAG-TGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGT 1893 ||| ||| | | ||||| | ||||||||||||| |||||||| ||||| ||||| Sbjct 46663 TTAAAATCCATGAAGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGT 46605 Query 1894 CTT 1896 ||| Sbjct 46604 CTT 46602 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1658 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1717 ||||||||||| || | ||| ||| || ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1718 TTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1774 || | ||| || ||||| | | ||| || | | ||||| || ||| | | || | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1775 AAGT--GC-GGATCTACGTCATCAATGACGTTATACCATGCGTCGTT 1818 || | || ||| ||||||||||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq30129 Length=3650 Score = 84.2 bits (92), Expect = 4e-13 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||||||||||| || | ||| |||| || |||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1715 TACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1770 ||||| | ||||| ||||| | | || || || | ||||| || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||||||||||| || | ||| |||| || |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1715 TACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTG 1771 ||||| | ||||| || |||| || || || | ||||| || ||| | | ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1772 AGGA---AGTGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTT 1818 | | | | |||| || || || ||||||||||||||| | || || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 172/253 (68%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||||||||||| | | ||| |||| || |||||||||||||||| || || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1715 TACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1769 ||||| | |||| ||||| | | || | || | ||||| || | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1770 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACC 1828 | | | | |||| ||||| || || |||||||||||||| || || |||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1829 TTTGGACTAAGATC--TAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCC 1886 || | | ||| ||| ||| | | || | ||||| ||||||||||| || | ||||| Sbjct 2020 TTCGAATTAAAATCCATAAAT-CTCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2077 Query 1887 ACATTGTCTTCCC 1899 | ||| ||||| Sbjct 2078 ATGCTGTTTTCCC 2090 >seq490 Length=137872 Score = 82.4 bits (90), Expect = 1e-12 Identities = 174/252 (69%), Gaps = 22/252 (9%) Strand=Plus/Minus Query 1663 ATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGT 1722 |||||| |||| |||| ||||||||| ||||||||||| | |||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1723 ATTGGATTGCCAGTCCCTTTG---GGCCCCCATGAACTCTTTAAAGTGCTT----GAG-G 1774 || | ||||||| || || |||||| || | ||| | | ||||| || | Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1775 AAGTGC-GGATCTACGTCATCAATGACGTTATACCATGCGTCGTT----ACTGTACACCT 1829 | ||| ||| |||||||| |||||||||||||||| || || | ||| || Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGT----CT 70446 Query 1830 TTGGACTAAGATCTA-AGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCCAC 1888 || | | | ||| | | ||||| | || || |||||||| || ||| |||||||| Sbjct 70445 TTCTATTGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCAT 70387 Query 1889 ATTGTCTTCCCA 1900 ||||||||| Sbjct 70386 TCAGTCTTCCCA 70375 >seq20728 Length=3653 Score = 80.6 bits (88), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 1680 TTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGGATTGCCAGTCCC 1739 |||| || || ||||||||||||| ||| || |||||||| | ||||| |||| || | Sbjct 1440 TTGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGC 1498 Query 1740 TTTGGGCCCCCATGAACTCTTTAAAGTGCT------TGAGGAAGTGCGGATCTACGTCAT 1793 || || || | ||||| || | | |||| | | | | |||| ||||||| Sbjct 1499 GCTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCAT 1558 Query 1794 CAATGACGTTATACCATGCGTCGTTACTGTACACCTTTGGACTAAGATCTA-AGTGCCCA 1852 | ||||||||||| ||||| || || |||| || | | ||| ||||| | | || Sbjct 1559 CGATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCTCA 1618 Query 1853 CACAGATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTCTTCCC 1899 | ||||| |||||| |||| || | |||||| ||| ||||| Sbjct 1619 -TTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCC 1664 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||||||||||| || | ||| |||| || |||||||||||||||| ||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1715 TACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1770 || || | ||||| | ||||| | || || || | ||||| || | | ||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 >seq442 Length=237535 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||||||||||| || ||| |||| || |||||||||||||||||| || ||| Sbjct 22778 GGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTTCCG 22837 Query 1715 TACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1770 ||||| | ||||| ||| ||| | ||| || || | ||||| || | | ||||| Sbjct 22838 TACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATAATGCTT 22893 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1655 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1714 || ||||||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1715 TACTTGGTATTGGATTGCCA 1734 ||||| | |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8612600784060