Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_009354.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq5745 107 3e-20 seq3283 105 1e-19 seq33 104 4e-19 seq22495 100 5e-18 seq3439 96.9 6e-17 seq1993 96.9 6e-17 seq6801 95.1 2e-16 seq77518 93.3 7e-16 seq4104 89.7 9e-15 seq30129 87.8 3e-14 seq442 87.8 3e-14 seq35612 86.0 1e-13 seq953 86.0 1e-13 seq54129 84.2 4e-13 seq3059 78.8 2e-11 seq80468 77.0 6e-11 >seq5745 Length=45059 Score = 107 bits (118), Expect = 3e-20 Identities = 168/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 1683 CCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCGTA 1742 ||| |||||||||| | ||| ||||||||| ||||||||||||||||| |||||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1743 CTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTTTAAAGTGTT------T 1796 ||| | ||| ||||| | | || || || || |||| || | | |||| | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1797 GAGATAATGGGGATCAACGTCATCAATGACGTTGTACCAAGCGTCGTTACTGTATACCTT 1856 | |||| ||| | ||||||||||||||| ||||| |||||||| ||| || Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1857 TGGGCTGAGGTCCA-GATGCCCACAGAGATAATTATGTGGACCCAATGACCTGGCCCA 1913 | | | |||| | ||||| | |||||||||||||||||| || | ||||| Sbjct 43720 CGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1681 GGCCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCG 1740 || || ||||||||||| | ||| |||||||||||||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1741 TACTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTTTAAAGTGTT----- 1795 ||||| | |||| ||||| | || ||| || || | |||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1796 -TGAGATAATGGGGATCAACGTCATCAATGACGTTGTACCAAGCGTCGTT 1844 | | ||||| ||| ||||| || |||||||| ||||| || || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 1683 CCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCGTA 1742 ||| ||||||||||| | ||| ||||||||||| ||||||||||||||| || ||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1743 CTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTTTAAAGTGTT------T 1796 ||| | ||| ||||||| | ||| | || | |||| || | | || | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1797 GAGATAATGGGGATCAACGTCATCAATGACGTTGTACCAAGCGTCGTTACTGTATACCTT 1856 | |||| ||| ||||||||||||||||| ||||| |||||||| |||| | Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1857 TGGGCTGAGGTCCA-GATGCCCACAGAGATAATTATGTGGACCCAATGACCTGGCCCA 1913 | | | |||| | ||||| | ||||||||||||||||| || | ||||| Sbjct 403123 CGAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq22495 Length=567 Score = 100 bits (110), Expect = 5e-18 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 1659 GAATTCTTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCC 1718 |||| ||||||| ||| || || ||||||||||| | ||| || ||||||||| Sbjct 392 GAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCA 333 Query 1719 TTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCAT 1778 ||||||||||||||| || |||||||| | |||| ||||||| | ||| || || | Sbjct 332 TTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTAC 273 Query 1779 AAACTCTTTAAAGTGTT------TGAGATAATGGGGATCAACGTCATCAATGACGTTGTA 1832 |||| || | | || | | | ||||| ||| | |||||| |||||||| || Sbjct 272 GAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATA 213 Query 1833 CCAAGCGTCGTT 1844 ||| || || || Sbjct 212 CCATGCATCATT 201 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1688 GATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTGG 1747 |||||||||| | ||| |||||||||||||||||||||||||||| || |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1748 TATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTTTAAAGTGTT------TGAGAT 1801 ||| ||||| | || ||| || || | |||| || | | || | | | || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1802 AATGGGGATCAACGTCATCAATGACGTTGTACCAAGCGTCGTT 1844 ||| ||| || ||||| |||||||| ||||| || || || Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq1993 Length=81530 Score = 96.9 bits (106), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 1683 CCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCGTA 1742 ||| ||||||||||| | ||| |||||||||| |||||||||||||||| |||||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1743 CTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTTTAAAGTGTT------T 1796 ||| | ||| ||||| | | || || | | |||| || | | || | | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1797 GAGATAATGGGGATCAACGTCATCAATGACGTTGTACCAAGCGTCGTTACTGTATACCTT 1856 | |||| ||| ||||||||||||||||| ||||| |||| ||| ||| || Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTT 74225 Query 1857 TGGGCTGAGGTCCA-GATGCCCACAGAGATAATTATGTGGACCCAATGA 1904 | | | |||| | ||||| | |||||||||||||||||| || Sbjct 74224 CGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGA 74177 >seq6801 Length=49729 Score = 95.1 bits (104), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1654 TCCAGGAATTCTTTATAGCTGGAATTGGG--CCCT-GGATTGCAAAGGAAGATTGTTGGA 1710 |||| ||| |||||||| ||| || |||| ||| ||||||| | ||| |||| Sbjct 47061 TCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGGA 47120 Query 1711 ATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCTCTCTGG 1770 ||||||||||||||||||||||| ||||||||||| | ||| ||| ||| | ||| Sbjct 47121 ATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGTTGCGCTGT 47180 Query 1771 GCCCCCATAAACTCTTTAAAGTGTT------TGAGATAATGGGGATCAACGTCATCAATG 1824 | | ||||| || | | |||| | | |||| ||| |||||||||||| Sbjct 47181 ATGCATACAAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAAGGACGTCATCAATG 47240 Query 1825 ACGTTGTACCAAGCGTCGTT 1844 | || ||||| |||||||| Sbjct 47241 ATATTATACCACGCGTCGTT 47260 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 177/258 (69%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1654 TCCAGGAATTCTTTATAGCTGGAATTGGG---CCCTGGATTGCAAAGGAAGATTGTTGGA 1710 |||| |||| ||||||| ||| || ||| ||||||||||| | ||| |||| Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1711 ATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCTCTCTGG 1770 |||||||||||||||||||||| || ||||||| | ||| || |||| | || Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1771 GCCCCCATAAACTCTTTAAAGTGTT------TGAGATAATGGGGATCAACGTCATCAATG 1824 || || | |||| || | | || | | | |||| ||| || ||||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1825 ACGTTGTACCAAGCGTCGTTACTGTATACCTTTGGGCTGAGGTCCA-GATGCCCACAGAG 1883 ||||| ||||| |||||||| |||| || | | |||| | ||||| | Sbjct 2253 ACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCA-TTAT 2195 Query 1884 ATAATTATGTGGACCCAA 1901 |||||||||||||||||| Sbjct 2194 ATAATTATGTGGACCCAA 2177 >seq4104 Length=64936 Score = 89.7 bits (98), Expect = 9e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1654 TCCAGGAATTCTTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGAATC 1713 |||| ||| ||||||| ||| ||| || ||||||||||| | ||| |||||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1714 CCGCCTTTAATTTGAACTGGCTTGCCGTACTT 1745 |||||||||||||||||||| || |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1681 GGCCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCG 1740 || || ||||||||||| | ||| |||||||||||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1741 TACTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTT 1786 ||||| | |||| ||||| | || ||| || || | |||| || Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 >seq442 Length=237535 Score = 87.8 bits (96), Expect = 3e-14 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1654 TCCAGGAATTCTTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGAATC 1713 |||| |||| ||||||| |||| || || ||||||||||| ||| |||||||| Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1714 CCGCCTTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCTCTCTGGGCC 1773 |||||||||||||||||| || |||||||| | |||| ||| ||| || || || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1774 CCCATAAACTCTT 1786 || | |||| || Sbjct 22871 CCTACGAACTGTT 22883 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1654 TCCAGGAATTCTTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGAATC 1713 |||| |||| ||||||| ||| || || ||||||||||| | ||| ||||||| Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1714 CCGCCTTTAATTTGAACTGGCTTGCCGTACTT 1745 |||||||||||||||||||| || |||||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 1571 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 1659 GAATTCTTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCC 1718 |||| ||||||| ||| || || |||||||||| | ||| ||||||||||||| Sbjct 1818 GAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCC 1877 Query 1719 TTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCAT 1778 ||||||||||| || || |||||||| | |||| ||||| | || ||| | || | Sbjct 1878 TTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTAC 1937 Query 1779 AAACTCTT--TAA-AGTGTT---TGAGATAATGGGGATCAACGTCATCAATGACGTTGTA 1832 |||| || ||| | | || | | ||||| ||| ||||| || || ||||| || Sbjct 1938 GAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATA 1997 Query 1833 CCAAGCGTCGTT 1844 ||| || || || Sbjct 1998 CCATGCATCATT 2009 >seq54129 Length=2260 Score = 84.2 bits (92), Expect = 4e-13 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1681 GGCCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCG 1740 || || ||||||||||| | ||| |||||||||||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1741 TACTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTT--TAAAG--TGTT- 1795 ||||| | |||| || |||| ||| || || | |||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1796 -TGAGATAATGGGGATCAACGTCATCAATGACGTTGTACCA 1835 | | ||||| ||| || || || |||||||| ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 1681 GGCCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCG 1740 || || ||||||||||| | ||| |||||||||||||||||||||||| ||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1741 TACTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTT 1786 || || | |||| | ||||| | ||| || || | |||| || Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTT 20314 >seq80468 Length=4946 Score = 77.0 bits (84), Expect = 6e-11 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1656 CAGGAATTCTTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGAATCCC 1715 || |||| ||||||| ||| || || |||||||||| | ||| ||||||| || Sbjct 4241 CAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCC 4300 Query 1716 GCCTTTAATTTGAACTGGCTTGCCGTACTTGGTATTG 1752 ||||||||| ||||| || || |||||||| |||||| Sbjct 4301 GCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTG 4337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8692524696310